Literature DB >> 33658498

Somatic mutations and single-cell transcriptomes reveal the root of malignant rhabdoid tumours.

Lars Custers1,2, Eleonora Khabirova3, Tim H H Coorens3, Thomas R W Oliver3,4,5, Camilla Calandrini1,2, Matthew D Young3, Felipe A Vieira Braga6, Peter Ellis3, Lira Mamanova3, Heidi Segers7, Arie Maat1, Marcel Kool1,8,9, Eelco W Hoving1, Marry M van den Heuvel-Eibrink1, James Nicholson4,10, Karin Straathof11,12, Liz Hook4,5, Ronald R de Krijger1,13, Claire Trayers4, Kieren Allinson4, Sam Behjati14,15,16, Jarno Drost17,18.   

Abstract

Malignant rhabdoid tumour (MRT) is an often lethal childhood cancer that, like many paediatric tumours, is thought to arise from aberrant fetal development. The embryonic root and differentiation pathways underpinning MRT are not firmly established. Here, we study the origin of MRT by combining phylogenetic analyses and single-cell mRNA studies in patient-derived organoids. Comparison of somatic mutations shared between cancer and surrounding normal tissues places MRT in a lineage with neural crest-derived Schwann cells. Single-cell mRNA readouts of MRT differentiation, which we examine by reverting the genetic driver mutation underpinning MRT, SMARCB1 loss, suggest that cells are blocked en route to differentiating into mesenchyme. Quantitative transcriptional predictions indicate that combined HDAC and mTOR inhibition mimic MRT differentiation, which we confirm experimentally. Our study defines the developmental block of MRT and reveals potential differentiation therapies.

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Year:  2021        PMID: 33658498     DOI: 10.1038/s41467-021-21675-6

Source DB:  PubMed          Journal:  Nat Commun        ISSN: 2041-1723            Impact factor:   14.919


  47 in total

1.  Germ-line and acquired mutations of INI1 in atypical teratoid and rhabdoid tumors.

Authors:  J A Biegel; J Y Zhou; L B Rorke; C Stenstrom; L M Wainwright; B Fogelgren
Journal:  Cancer Res       Date:  1999-01-01       Impact factor: 12.701

2.  SMARCA4-mutated atypical teratoid/rhabdoid tumors are associated with inherited germline alterations and poor prognosis.

Authors:  Martin Hasselblatt; Inga Nagel; Florian Oyen; Kerstin Bartelheim; Robert B Russell; Ulrich Schüller; Reimar Junckerstorff; Marc Rosenblum; Ali H Alassiri; Sabrina Rossi; Irene Schmid; Nicholas G Gottardo; Helen Toledano; Elisabetta Viscardi; Milagros Balbin; Leora Witkowski; Qianhao Lu; Matthew J Betts; William D Foulkes; Reiner Siebert; Michael C Frühwald; Reinhard Schneppenheim
Journal:  Acta Neuropathol       Date:  2014-07-25       Impact factor: 17.088

Review 3.  Developmental origins and emerging therapeutic opportunities for childhood cancer.

Authors:  Mariella Filbin; Michelle Monje
Journal:  Nat Med       Date:  2019-03-06       Impact factor: 53.440

4.  Developmental and oncogenic programs in H3K27M gliomas dissected by single-cell RNA-seq.

Authors:  Mariella G Filbin; Itay Tirosh; Volker Hovestadt; McKenzie L Shaw; Leah E Escalante; Nathan D Mathewson; Cyril Neftel; Nelli Frank; Kristine Pelton; Christine M Hebert; Christine Haberler; Keren Yizhak; Johannes Gojo; Kristof Egervari; Christopher Mount; Peter van Galen; Dennis M Bonal; Quang-De Nguyen; Alexander Beck; Claire Sinai; Thomas Czech; Christian Dorfer; Liliana Goumnerova; Cinzia Lavarino; Angel M Carcaboso; Jaume Mora; Ravindra Mylvaganam; Christina C Luo; Andreas Peyrl; Mara Popović; Amedeo Azizi; Tracy T Batchelor; Matthew P Frosch; Maria Martinez-Lage; Mark W Kieran; Pratiti Bandopadhayay; Rameen Beroukhim; Gerhard Fritsch; Gad Getz; Orit Rozenblatt-Rosen; Kai W Wucherpfennig; David N Louis; Michelle Monje; Irene Slavc; Keith L Ligon; Todd R Golub; Aviv Regev; Bradley E Bernstein; Mario L Suvà
Journal:  Science       Date:  2018-04-20       Impact factor: 47.728

5.  Spectrum of SMARCB1/INI1 mutations in familial and sporadic rhabdoid tumors.

Authors:  Katherine W Eaton; Laura S Tooke; Luanne M Wainwright; Alexander R Judkins; Jaclyn A Biegel
Journal:  Pediatr Blood Cancer       Date:  2011-01       Impact factor: 3.167

6.  Rhabdoid tumor: gene expression clues to pathogenesis and potential therapeutic targets.

Authors:  Samantha Gadd; Simone Treiger Sredni; Chiang-Ching Huang; Elizabeth J Perlman
Journal:  Lab Invest       Date:  2010-03-08       Impact factor: 5.662

7.  Genome-Wide Profiles of Extra-cranial Malignant Rhabdoid Tumors Reveal Heterogeneity and Dysregulated Developmental Pathways.

Authors:  Hye-Jung E Chun; Emilia L Lim; Alireza Heravi-Moussavi; Saeed Saberi; Karen L Mungall; Mikhail Bilenky; Annaick Carles; Kane Tse; Inna Shlafman; Kelsey Zhu; Jenny Q Qian; Diana L Palmquist; An He; William Long; Rodrigo Goya; Michelle Ng; Veronique G LeBlanc; Erin Pleasance; Nina Thiessen; Tina Wong; Eric Chuah; Yong-Jun Zhao; Jacquie E Schein; Daniela S Gerhard; Michael D Taylor; Andrew J Mungall; Richard A Moore; Yussanne Ma; Steven J M Jones; Elizabeth J Perlman; Martin Hirst; Marco A Marra
Journal:  Cancer Cell       Date:  2016-03-14       Impact factor: 31.743

8.  Truncating mutations of hSNF5/INI1 in aggressive paediatric cancer.

Authors:  I Versteege; N Sévenet; J Lange; M F Rousseau-Merck; P Ambros; R Handgretinger; A Aurias; O Delattre
Journal:  Nature       Date:  1998-07-09       Impact factor: 49.962

9.  Identification and Analyses of Extra-Cranial and Cranial Rhabdoid Tumor Molecular Subgroups Reveal Tumors with Cytotoxic T Cell Infiltration.

Authors:  Hye-Jung E Chun; Pascal D Johann; Katy Milne; Marc Zapatka; Annette Buellesbach; Naveed Ishaque; Murat Iskar; Serap Erkek; Lisa Wei; Basile Tessier-Cloutier; Jake Lever; Emma Titmuss; James T Topham; Reanne Bowlby; Eric Chuah; Karen L Mungall; Yussanne Ma; Andrew J Mungall; Richard A Moore; Michael D Taylor; Daniela S Gerhard; Steven J M Jones; Andrey Korshunov; Manfred Gessler; Kornelius Kerl; Martin Hasselblatt; Michael C Frühwald; Elizabeth J Perlman; Brad H Nelson; Stefan M Pfister; Marco A Marra; Marcel Kool
Journal:  Cell Rep       Date:  2019-11-07       Impact factor: 9.423

10.  The occurrence of intracranial rhabdoid tumours in mice depends on temporal control of Smarcb1 inactivation.

Authors:  Zhi-Yan Han; Wilfrid Richer; Paul Fréneaux; Céline Chauvin; Carlo Lucchesi; Delphine Guillemot; Camille Grison; Delphine Lequin; Gaelle Pierron; Julien Masliah-Planchon; André Nicolas; Dominique Ranchère-Vince; Pascale Varlet; Stéphanie Puget; Isabelle Janoueix-Lerosey; Olivier Ayrault; Didier Surdez; Olivier Delattre; Franck Bourdeaut
Journal:  Nat Commun       Date:  2016-01-28       Impact factor: 14.919

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  9 in total

1.  Human embryo polarization requires PLC signaling to mediate trophectoderm specification.

Authors:  Marta Shahbazi; Angel Martin; Meng Zhu; Chuanxin Zhang; Berna Sozen; Mate Borsos; Rachel S Mandelbaum; Richard J Paulson; Matteo A Mole; Marga Esbert; Shiny Titus; Richard T Scott; Alison Campbell; Simon Fishel; Viviana Gradinaru; Han Zhao; Keliang Wu; Zi-Jiang Chen; Emre Seli; Maria J de Los Santos; Magdalena Zernicka Goetz
Journal:  Elife       Date:  2021-09-27       Impact factor: 8.140

2.  Normal and tumor-derived organoids as a drug screening platform for tumor-specific drug vulnerabilities.

Authors:  Camilla Calandrini; Jarno Drost
Journal:  STAR Protoc       Date:  2022-01-10

3.  Characteristics and outcome of children with renal tumors in the Netherlands: The first five-year's experience of national centralization.

Authors:  Prakriti Roy; Sophie E van Peer; Martin M de Witte; Godelieve A M Tytgat; Henrike E Karim-Kos; Martine van Grotel; Cees P van de Ven; Annelies M C Mavinkurve-Groothuis; Johannes H M Merks; Roland P Kuiper; Janna A Hol; Geert O R Janssens; Ronald R de Krijger; Marjolijn C J Jongmans; Jarno Drost; Alida F W van der Steeg; Annemieke S Littooij; Marc H W A Wijnen; Harm van Tinteren; Marry M van den Heuvel-Eibrink
Journal:  PLoS One       Date:  2022-01-13       Impact factor: 3.240

4.  Induction of senescence-associated secretory phenotype underlies the therapeutic efficacy of PRC2 inhibition in cancer.

Authors:  Liping Chu; Yuxiu Qu; Yang An; Linjun Hou; Juewan Li; Weijia Li; Gaofeng Fan; Bao-Liang Song; En Li; Liye Zhang; Wei Qi
Journal:  Cell Death Dis       Date:  2022-02-15       Impact factor: 8.469

Review 5.  Current and Emerging Therapeutic Approaches for Extracranial Malignant Rhabdoid Tumors.

Authors:  Karolina Nemes; Pascal D Johann; Stefanie Tüchert; Patrick Melchior; Christian Vokuhl; Reiner Siebert; Rhoikos Furtwängler; Michael C Frühwald
Journal:  Cancer Manag Res       Date:  2022-02-09       Impact factor: 3.989

6.  Single-cell transcriptomics identifies potential cells of origin of MYC rhabdoid tumors.

Authors:  Monika Graf; Marta Interlandi; Natalia Moreno; Dörthe Holdhof; Carolin Göbel; Viktoria Melcher; Julius Mertins; Thomas K Albert; Dennis Kastrati; Amelie Alfert; Till Holsten; Flavia de Faria; Michael Meisterernst; Claudia Rossig; Monika Warmuth-Metz; Johannes Nowak; Gerd Meyer Zu Hörste; Chloe Mayère; Serge Nef; Pascal Johann; Michael C Frühwald; Martin Dugas; Ulrich Schüller; Kornelius Kerl
Journal:  Nat Commun       Date:  2022-03-22       Impact factor: 14.919

Review 7.  SMARCB1-Deficient Cancers: Novel Molecular Insights and Therapeutic Vulnerabilities.

Authors:  Garrett W Cooper; Andrew L Hong
Journal:  Cancers (Basel)       Date:  2022-07-27       Impact factor: 6.575

8.  Human induced pluripotent stem cells display a similar mutation burden as embryonic pluripotent cells in vivo.

Authors:  Karlijn A L Hasaart; Freek Manders; Joske Ubels; Mark Verheul; Markus J van Roosmalen; Niels M Groenen; Rurika Oka; Ewart Kuijk; Susana M Chuva de Sousa Lopes; Ruben van Boxtel
Journal:  iScience       Date:  2022-01-06

9.  Single cell derived mRNA signals across human kidney tumors.

Authors:  Matthew D Young; Thomas J Mitchell; Lars Custers; Thanasis Margaritis; Francisco Morales-Rodriguez; Kwasi Kwakwa; Eleonora Khabirova; Gerda Kildisiute; Thomas R W Oliver; Ronald R de Krijger; Marry M van den Heuvel-Eibrink; Federico Comitani; Alice Piapi; Eva Bugallo-Blanco; Christine Thevanesan; Christina Burke; Elena Prigmore; Kirsty Ambridge; Kenny Roberts; Felipe A Vieira Braga; Tim H H Coorens; Ignacio Del Valle; Anna Wilbrey-Clark; Lira Mamanova; Grant D Stewart; Vincent J Gnanapragasam; Dyanne Rampling; Neil Sebire; Nicholas Coleman; Liz Hook; Anne Warren; Muzlifah Haniffa; Marcel Kool; Stefan M Pfister; John C Achermann; Xiaoling He; Roger A Barker; Adam Shlien; Omer A Bayraktar; Sarah A Teichmann; Frank C Holstege; Kerstin B Meyer; Jarno Drost; Karin Straathof; Sam Behjati
Journal:  Nat Commun       Date:  2021-06-23       Impact factor: 14.919

  9 in total

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