Although cryopreservation is widely used in animal breeding, the technique is still suboptimal. The population of spermatozoa surviving the procedure experiences changes attributed to alteration in their redox regulation. In order to expand our knowledge regarding this particular aspect, the proteome in fresh and frozen thawed aliquots of equine spermatozoa was studied to identify the proteins most severely affected by the procedure. If alteration of redox regulation is a major factor explaining cryodamage, proteins participating in redox regulation should be principally affected. Using a split sample design, 30 ejaculates from 10 different stallions were analyzed as fresh spermatozoa, and another aliquot from the same ejaculate was analyzed as a frozen thawed sample. The proteome was studied under both conditions using UHPLC-MS/MS and bioinformatic analysis conducted to identify discriminant variables between both conditions. Data are available through the ProteomeXchange Consortium with identifier PXD022236. The proteins most significantly reduced were Aldo-keto reductase family 1 member B (p = 2.2 × 10-17) and Superoxide dismutase (Cu-Zn) (p = 4.7 × 10-14). This is the first time that SOD1 has been identified as a discriminating variable using bioinformatic analysis, where it was one of the most highly significantly different proteins seen between fresh and frozen thawed semen. This finding strongly supports the theory that alteration in redox regulation and oxidative stress is a major factor involved in cryodamage and suggests that control of redox regulation should be a major target to improve current cryopreservation procedures.
Although cryopreservation is widely used in animal breeding, the technique is still suboptimal. The population of spermatozoa surviving the procedure experiences changes attributed to alteration in their redox regulation. In order to expand our knowledge regarding this particular aspect, the proteome in fresh and frozen thawed aliquots of equine spermatozoa was studied to identify the proteins most severely affected by the procedure. If alteration of redox regulation is a major factor explaining cryodamage, proteins participating in redox regulation should be principally affected. Using a split sample design, 30 ejaculates from 10 different stallions were analyzed as fresh spermatozoa, and another aliquot from the same ejaculate was analyzed as a frozen thawed sample. The proteome was studied under both conditions using UHPLC-MS/MS and bioinformatic analysis conducted to identify discriminant variables between both conditions. Data are available through the ProteomeXchange Consortium with identifier PXD022236. The proteins most significantly reduced were Aldo-keto reductase family 1 member B (p = 2.2 × 10-17) and Superoxide dismutase (Cu-Zn) (p = 4.7 × 10-14). This is the first time that SOD1 has been identified as a discriminating variable using bioinformatic analysis, where it was one of the most highly significantly different proteins seen between fresh and frozen thawed semen. This finding strongly supports the theory that alteration in redox regulation and oxidative stress is a major factor involved in cryodamage and suggests that control of redox regulation should be a major target to improve current cryopreservation procedures.
In comparison with other domestic species,
artificial insemination (AI) with frozen thawed spermatozoa is not
as widely used in equine breeding. There are a number of factors that
can explain this situation, among them past restrictions in the use
of reproductive technologies by most stud books. As a result of these
restrictions, in most breeds artificial insemination has been introduced
in the past two decades. In comparison, artificial insemination has
been widely used in bovines since the 1950s. As a consequence, research
in equine reproductive biotechnologies is lagging a few decades behind.
Perhaps the major constraint for the development of AI using equine
frozen thawed semen is the stallion to stallion variability in cryotolerance.[1,2] However, in spite of recent research,[3,4] the reasons
behind this variability remain largely unknown. Cryopreservation causes
osmotic stress during freezing and especially during thawing, damaging
all the sperm structures, including plasma and mitochondrial membranes.[4] Osmotic effects account for sperm death due to
acute necrosis; however, an important percentage of the surviving
population experience accelerated aging leading to premature cell
death. It is believed this process is due to redox imbalance and oxidative
stress originating in the mitochondria. Advances in the identification
of all the factors that control cryotolerance could be of significant
importance for the equine industry. These are likely to serve as powerful
tools for definition of specific targets which can be used to improve
existing protocols used for cryopreservation. The introduction of
the omics in spermatology is facilitating a rapid progression of knowledge
of the biology of spermatozoa,[5−9] and these technologies have recently been introduced as a tool for
the study of the stallion spermatozoa.[10,11] Proteomic
technologies have been applied to investigate the changes induced
by cryopreservation in different species,[11−18] but to date, only one study[11] has addressed
the impact of cryopreservation in equine spermatozoa, revealing an
important impact on proteins involved in both oxidative phosphorylation
and redox regulation. This study focused on enrichment analysis of
groups of proteins based on gene ontology terms and pathways analysis.
The present study aimed to define the effects of cryopreservation
on the equine sperm proteome.
Materials and Methods
Reagents and Media
Hoechst 33342 [(Ex: 350 nm, Em: 461 nm), (ref: H3570)] was purchased
from Molecular Probes (Leiden, The Netherlands). Anti-4 hydroxynonenal
(4-HNE) antibody [HNEJ-2] (ref: ab48506) and goat antimouse IgG (H&L)
Alexa Fluor 647 [(Ex: 652 nm, Em: 668 nm) (ref: ab150115)] were purchased
from Abcam (Cambridge, UK). All other chemicals were purchased from
Sigma-Aldrich (Madrid, Spain), unless otherwise stated.
Semen Collection
and Processing
A sample of 10 stallions
of different breeds was used to obtain semen. Animals were housed
as required by specific institutional and European regulations for
animal care (Law 6/2913 June 11th and European Directive 2010/63/EU).
The study was approved by the University ethics committee. Collection
of ejaculates was performed using a Missouri model artificial vagina,
which was warmed and lubricated. An inline filter was used for removal
of the gel fraction of the ejaculate. Upon collection semen was subsequently
transferred straight to the laboratory where it was evaluated and
processed. A split sample approach was used for experimental design,
by dividing single ejaculates into two subsamples (fresh and frozen
thawed experimental groups). Semen was processed in the laboratory
using colloidal centrifugation[19,20] to remove both dead
spermatozoa and seminal plasma, and then either resuspended in Tyrodes
media (20 mM HEPES, 5 mM Glucose, 96 mM NaCl, 15 mM NaHCO3, 1 mM Na-Pyruvate, 21.6 Na-Lactate, 2 mM CaCl2·2H2O, 3.1 mM KCl, 0.4 mM MgSO4·7H2O, 0.3 mM NaH2PO4·H2O, 0.3%
BSA) 285 and 315 mOsm/kg at pH 7.4[21] (fresh
extended semen), or resuspended in cryopreservation media using standard
procedures and protocols, as described in previous research by our
group used for freezing (frozen thawed semen).[22] Briefly, dilution of the aliquot was performed using the
Cáceres freezing medium (University of Extremadura Cáceres,
Spain), which is formulated from 2% egg yolk, 1% glycerol, and 4%
dimethylformamide to 100 × 106 spermatozoa/mL. Extended
semen was loaded into 0.5 mL straws (IMV, L’Aigle, France),
which were then sealed ultrasonically using an UltraSeal 21 (Minitube
of America MOFA, Verona, Wisconsin, USA) machine, after which they
were immediately transferred to an IceCube 14S (SY-LAB Neupurkersdorf,
Austria) programmable freezer. The freezing curve used followed the
subsequent steps. Straws were first kept at 20 °C for 15 min,
after which they were then cooled slowly from 20 to 5 °C at a
cooling rate of 0.1 °C/min. The freezing rate was then increased
to −40 °C/min to take the temperature from 5 °C to
−140 °C. After completion of the freezing curve straws
were then plunged into liquid nitrogen and stored until further analysis.
Thawing of frozen straws was performed using a water bath at 37 °C
for at least 30 s.
Experimental Design
Ejaculates were
collected from 10 different
stallions on 3 different occasions and collection and processing was
as follows. Ejaculates were divided into two, and half of each ejaculate
was frozen using standard protocols previously described in our laboratory
(frozen thawed), while the other half was processed as for fresh spermatozoa
(fresh).
Sperm Preparation
Both fresh and frozen thawed (FT)
samples
of spermatozoa were washed three times using PBS (600g × 10 min). After this, samples were subsequently pelleted and
kept frozen at −80 °C until further analysis. Phase contrast
microscopy was used to ensure purity of the samples.
Protein Solubilization
Lysis buffer (C7:C7Bz0 [3-(4-heptyl)
phenyl-(3-hydroxypropyl) dimethylammoniopropanesulfonate], 7 M urea,
2 M thiourea, and 40 mM Tris (pH 10.4)) was used to solubilize isolated
spermatozoa (200 × 106 spermatozoa). Twenty microliters
of lysis buffer were added for every 10 × 106 spermatozoa,
which were then vortexed and incubated while under constant rotation
at −4 °C for 1 h.
Protein Quantification
The manufacturer’s instructions (https://www.gelifesciences.co.jp/tech_support/manual/pdf/80648622.pdf) were followed while using the 2-D Quant Kit (GE Healthcare, Sevilla
Spain) for protein quantification. All samples were then normalized
in order to obtain a final protein concentration of 100 μg per
sample.
In-Solution Trypsin Digestion
100 μL of 25 mM
ammonium
bicarbonate buffer pH 8.5 (100 μg of protein in 300 μL
of solution) was mixed with 200 μL of solution obtained from
the previous protein solubilization stage. Proteins were reduced in
this solution by the addition of 30 μL of 10 mM DTT after which
they were incubated at 56 °C for 20 min. Alkylation of proteins
was then performed by adding 30 μL of 20 mM IAA with subsequent
incubation for 30 min at room temperature (r.t.) in the dark. Lastly,
1 μL of Trypsin Proteomics grade (Sigma) (Trypsin solution:
1 μg/μL in 1 mM HCl) was added for digestion of proteins
for at least 3 h to overnight at 37 °C. Ten μL of 0.1%
formic acid was used to stop the reaction and samples were filtered
through 0.2 μm (hydrophilic PTFE) into 2 mL dark glass vials.
To complete the process, samples were dehydrated using a nitrogen
current with the vial placed in a heating block at 35 °C. Dry
samples were then resuspended in 20 μL of buffer A, consisting
of water/acetonitrile/formic acid (94.9:5:0.1)
UHPLC-MS/MS Analysis
A UHPLC-MS system consisting of an
Agilent 1290 Infinity II Series UHPLC (Agilent Technologies, Santa
Clara, CA, USA) fitted with an automated multisampler module and a
high speed binary pump, coupled to an Agilent 6550 Q-TOF Mass Spectrometer
(Agilent Technologies, Santa Clara, CA, USA) using an Agilent Jet
Stream Dual electrospray (AJS-Dual ESI) interface was used to separate
and analyze the samples. MassHunter Workstation Data Acquisition software
(Agilent Technologies, Rev. B.06.01) was used to control the HPLC
and Q-TOF. Samples were injected onto an Agilent AdvanceBio Peptide
Mapping HPLC column (2.7 μm, 150 × 2.1 mm, Agilent technologies),
appropriate for peptide separation and analysis, at a flow rate of
0.4 mL/min and thermostatted at 55 °C. Operation of the mass
spectrometer was in positive mode and a gradient program was used
starting with 2% of B (buffer B: water/acetonitrile/formic acid, 10:89.9:0.1)
remaining in isocratic mode for 5 min, increasing linearly up to 45%
B over a period of 40 min, after which it was further increased up
to 95% B over a time frame of 15 min and then kept constant for 5
min. The initial condition for column conditioning was used for 5
min of post-time after this 65 min run prior to the next run. Nebulizer
gas pressure was set to 35 psi, and drying gas flow was set to 10
L/min at a temperature of 250 °C, with sheath gas flow set to
12 L/min at 300 °C. Capillary spray, fragmentor and octopole
RF Vpp voltages were 3500 V, 340 and 750 V respectively. Profile data
were acquired for both MS and MS/MS scans in Extended dynamic range
mode[23,24] was used for acquisition of profile data
for both MS and MS/MS scans to eradicate potential contaminants. MS
and MS/MS scan rates were 8 spectra/sec and 3 spectra/sec respectively
with a mass range of 50–1700 m/z. Precursor selection by abundance and a maximum of 20 precursors
selected per cycle were used in auto MS/MS mode. A ramped collision
energy was used with a slope of 3.6 and an offset of −4.8.
The same ion was rejected after two consecutive scans.
Data Processing
Spectrum Mill MS Proteomics Workbench (Rev B.04.01, Agilent Technologies,
Santa Clara, CA, USA) was used for processing and analysis of data.
In summary, default conditions were used for extraction of raw data
as follows: nonfixed or variable modifications were selected; [MH]+ 50–10 000 m/z; maximum precursor charge +5; retention time and m/z tolerance ±60 s; minimum signal-to-noise
MS (S/N) 25; finding 12C signals. The following criteria
were used for the MS/MS search against the appropriate and updated
protein database (in this case: Uniprot/Horse): selection of nonfixed
modifications with the following selected as variable modifications:
carbamidomethylated cysteines and tryptic digestion with 5 maximum
missed cleavages; ESI-Q-TOF instrument, minimum matched peak intensity
50%, maximum ambiguous precursor charge +5, monoisotopic masses, peptide
precursor mass tolerance 20 ppm, product ion mass tolerance 50 ppm,
and calculation of reversed database scores. Validation of peptide
and protein data was performed using the autovalidation algorithm.
This is completely automated and used to validate the highest-scoring
results; those which do not require manual review are considered high-quality
results. The autovalidation strategy used was autothreshold, in which
the peptide score is automatically optimized for a target % FDR (1.2%).
Protein polishing validation was then performed in order to increase
the sequence coverage of validated results with the restriction of
a new maximum target protein FDR (0%).
Bioinformatics
Variance
Filtering and PCA
Data
were normalized and log transformed. Variables with low overall variance
were filtered out to reduce the impact of noise, and the remaining
variables were then centered and scaled to zero mean and unit variance,
after which Principal Component Analysis (PCA) was used for visualization
of the data set in a three-dimensional space. The optimal filter threshold
was established using the projection score.[25,26] Qlucore Omics Explorer version 3.6 Lund Sweden (https://qlucore.com) bioinformatics
software was used for analysis. Hierarchical clustering and heat maps
were used to display protein expression patterns[27] and t-SNE (t-statistic Stochastic Neighbor Embedding) maps
of standardized samples were used to identify relations between samples.[28,29]
Identification of Discriminating Variables
Qlucore
Omics
Explorer (https://qlucore.com) was used for identification of discriminating variables that are
most highly significantly different between the two subgroups, fresh
and frozen thawed spermatozoa. Identification of significantly different
variables between the subgroups of fresh and frozen thawed spermatozoa
from every single ejaculate was undertaken by fitting a linear model
for each variable with each condition as a predictor and including
the stallion nuisance covariate. The Benjamini–Hochberg method[30,31] was used for multiple testing with adjusted p-values,
and variables with adjusted p-values below 0.1 were
considered significant.
Enrichment Analysis
Enrichment analysis
was performed using the g:Profiler web server
(https://biit.cs.ut.ee/gprofiler/gost)[32] of the most abundant proteins in fresh
or frozen thawed ejaculates. Electronically inferred annotations were
excluded from enrichment analysis and focus on annotations with stronger
evidence when higher confidence is wanted for the enrichment results.
Only annotated genes were used and the g:SCS threshold was set at P < 0.01.
Spermatozoa Motility
A Computer Assisted Sperm Analysis (CASA) system (ISAS Proiser,
Valencia, Spain) was used to assess sperm motility and kinematic parameters
as previously described.[33−35] In brief, a Leja chamber with
a depth of 20 μm (Leja, Amsterdam, The Netherlands) was placed
on a warmed stage, at 38 °C and loaded with semen. Evaluation
of 60 consecutive digitalized images obtained using a 10× negative
phase-contrast objective (Olympus CX41) was used for analysis. A minimum
of three different fields were captured, ensuring that at least 500
spermatozoa were analyzed per sample. Spermatozoa with a VAP (average
velocity) < 15 μm/s were considered immotile, while spermatozoa
with VAP > 15 μm/s were considered motile. Spermatozoa deviating
<45% from a straight line were classified as linearly motile.
Measurement
of Lipid Peroxidation
Two μL/mL of a stock solution
of 0.1 mg/mL of anti 4-HNE primary antibody was used to stain spermatozoa
(5 × 106/mL) in 1 mL of PBS and these were then incubated
at r.t. in the dark for 30 min. PBS was then used to wash cells and
these were stained with 2 μL/ml of secondary Anti mouse Alexa
Fluor 647 antibody (Excitation 650 nm, Emission 665 nm) and 0.2 μM
Hoechst 33342 (Excitation 350 nm, Emission 461 nm) and incubated for
a further 30 min in the dark at r.t.. Cells were then washed in PBS
and samples were run immediately through the flow cytometer (Cytoflex
LX flow cytometer Beckman Coulter, Brea, CA, USA), equipped with ultraviolet,
violet, blue, yellow, red, and infrared lasers. Daily calibration
of the instrument was performed using specific calibration beads provided
by the manufacturer. A compensation overlap was performed before each
experiment. Files were exported as FCS files and analyzed using FlowjoV
10.7.1 Software for Mac (Ashland, OR, USA). Controls consisted of
unstained, single stained, secondary only antibody staining, and fluorescence
minus one (FMO) controls, to ensure gates and compensations were properly
set. Positive controls for 4-HNE were samples supplemented with 800 μM
SO4Fe and 1.7 M of H2O2 (Sigma) to
induce the Fenton reaction. Debris were gated out based on DNA content
of the events after H33342 staining.[36,37]
Statistical
Analysis
GraphPad Prism version 7.00 for Mac, La Jolla, CA,
USA, www.graphpad.com was
used for statistical analysis. Fresh and frozen thawed samples were
compared using a two tailed Mann–Whitney test. Differences
were considered significant when p < 0.05, and
results are displayed as means ± SEM.
Results
Cryopreservation
Impacts the Stallion Sperm Proteome
Identification and quantification
of a total of 910 different proteins was performed. The mass spectrometry
proteomics data have been deposited in the ProteomeXchange Consortium
via the PRIDE[38] partner repository with
data set identifier PXD022236.Cryopreservation caused an important
impact on the stallion sperm proteome (Figure ). A Volcano plot revealed that numerous
proteins experienced either increases or decreases in levels as a
result of cryopreservation. Venn diagrams were used to identify the
number of proteins varying between both conditions (Figure ). Following this a two group
(fresh vs frozen thawed) analysis was performed and changes identified
in the proteome with a fold change >2 with p =
0.04 and q = 0.1, obtaining 102 proteins affected
by the procedure. In the heat map in Figure , changes in the stallion proteome as a consequence
of cryopreservation are represented. Another Venn diagram was then
built to identify proteins changing during the procedure and proteins
which were abundant under both fresh and frozen thawed conditions
(Figure ). In order
to better identify changes caused by cryopreservation, enrichment
analysis in both groups using g profiler was performed. In fresh semen,
the proteins identified were enriched with the GO terms and KEGG pathways
related to oxidoreductase activity, cellular
respiration, mitochondria, chaperone
complex, and metabolic pathways (Figure ). In proteins which
were most abundant in frozen thawed samples, the Kyoto encyclopedia
of genes and genomes (KEGG) pathway RNA degradation (KEGG:03018) was
significantly enriched (Figure ).
Figure 1
Volcano plot showing changes in the stallion
sperm proteome as a consequence of cryopreservation. Proteins which
were more abundant in fresh samples (and less abundant in frozen thawed
samples) are presented on the right-hand side of the volcano plot,
proteins most abundant in frozen and thawed samples (and less abundant
in fresh samples) are presented on the left-hand side of the volcano
plot. The two most significantly different proteins between the two
conditions (higher fold change and higher p and q values) are depicted. The difference of protein content
(log2 fold change) is plotted against the significance
of the difference −log10(p) between
the two conditions (fresh and frozen thawed spermatozoa) (3 independent
ejaculates from 10 different stallions in addition to two technical
replicates n = 60 samples were used to derive results
from).
Figure 2
Venn diagram
showing the overall impact of cryopreservation on the proteome of
stallion spermatozoa. The number of proteins present in significantly
different amounts (either increased or decreased) in both conditions
are presented in the diagram. On the left, the number of proteins
present in significantly different amounts in fresh semen, on the
right the number of proteins present in significantly different amounts
in frozen thawed samples.
Figure 3
Heat map
showing the impact of cryopreservation on the
proteome of stallion spermatozoa. Proteins are classified following
hierarchical clustering. Blue marks correspond with fresh samples,
yellow marks correspond with frozen thawed samples. The heat map code
is present with red areas representing greater amounts of protein
and green areas lesser amount of protein. Proteins were normalized
and filtered by a fold change >3 with p = 0.04
and q = 0.1.
Figure 4
Venn diagram
showing changes in the stallion sperm proteome as a
consequence of cryopreservation. The number of proteins most abundant
in each of the conditions are shown. On the left 55 proteins were
more abundant in fresh spermatozoa, on the right 48 proteins were
more abundant in frozen and thawed spermatozoa.
Figure 5
g:GOST
multiquery Manhattan
plot showing enrichment analysis of proteins present in higher amounts
in fresh (A) and frozen thawed samples (B). The sperm proteome under
each condition was queried against the equine proteome database. Gene
Ontology (GO) terms for molecular function (MF) are in red, those
for biological process (BP) in orange, and those for cellular component
(CC) in green. KEGG pathways are depicted in red. The p values are depicted on the y axis and in more detail
in the results table below the image.
Volcano plot showing changes in the stallion
sperm proteome as a consequence of cryopreservation. Proteins which
were more abundant in fresh samples (and less abundant in frozen thawed
samples) are presented on the right-hand side of the volcano plot,
proteins most abundant in frozen and thawed samples (and less abundant
in fresh samples) are presented on the left-hand side of the volcano
plot. The two most significantly different proteins between the two
conditions (higher fold change and higher p and q values) are depicted. The difference of protein content
(log2 fold change) is plotted against the significance
of the difference −log10(p) between
the two conditions (fresh and frozen thawed spermatozoa) (3 independent
ejaculates from 10 different stallions in addition to two technical
replicates n = 60 samples were used to derive results
from).Venn diagram
showing the overall impact of cryopreservation on the proteome of
stallion spermatozoa. The number of proteins present in significantly
different amounts (either increased or decreased) in both conditions
are presented in the diagram. On the left, the number of proteins
present in significantly different amounts in fresh semen, on the
right the number of proteins present in significantly different amounts
in frozen thawed samples.Heat map
showing the impact of cryopreservation on the
proteome of stallion spermatozoa. Proteins are classified following
hierarchical clustering. Blue marks correspond with fresh samples,
yellow marks correspond with frozen thawed samples. The heat map code
is present with red areas representing greater amounts of protein
and green areas lesser amount of protein. Proteins were normalized
and filtered by a fold change >3 with p = 0.04
and q = 0.1.Venn diagram
showing changes in the stallion sperm proteome as a
consequence of cryopreservation. The number of proteins most abundant
in each of the conditions are shown. On the left 55 proteins were
more abundant in fresh spermatozoa, on the right 48 proteins were
more abundant in frozen and thawed spermatozoa.g:GOST
multiquery Manhattan
plot showing enrichment analysis of proteins present in higher amounts
in fresh (A) and frozen thawed samples (B). The sperm proteome under
each condition was queried against the equine proteome database. Gene
Ontology (GO) terms for molecular function (MF) are in red, those
for biological process (BP) in orange, and those for cellular component
(CC) in green. KEGG pathways are depicted in red. The p values are depicted on the y axis and in more detail
in the results table below the image.In order to reduce the number of proteins retrieved,
the threshold for the fold change was further increased and the q value reduced, leading to identification of 33 proteins
in which amounts in the stallion spermatozoa were significantly affected
by the cryopreservation procedure with a fold change >4 with p = 1.15 × 10–18 and q = 3.6 × 10–8. These included proteins whose
levels either increased or decreased as consequence of cryopreservation
(Figure and 7). A separate analysis for proteins whose level
increased or decreased after cryopreservation was also performed.
A 3D principal component analysis (PCA) was then conducted of the
variables most significantly affected by the procedure revealing two
highly differentiated groups of proteins (Figure ). A t-SNE analysis was also applied to the
individual ejaculates, revealing two distinct populations, with the
majority corresponding to either fresh or frozen thawed aliquots (Figure ).
Figure 6
Heat map showing discriminant
variables between
fresh and frozen thawed spermatozoa. Proteins are classified following
hierarchical clustering. Blue marks correspond with fresh samples,
yellow marks correspond with frozen thawed samples. The heat map code
is present with red areas representing greater amounts of protein
and green areas lesser amounts of protein. Proteins were normalized
and filtered by a fold change >3.75 with p = 1.15
× 10–18 and q = 3.6 ×
10–8.
Figure 7
Differences in the amount
of specific representative proteins under
two conditions, fresh and frozen thawed spermatozoa. Qlucore Omics
Explorer (Lund, Sweden https://qlucore.com) was used to compare differences in the relative amounts of proteins
based on spectral counts between fresh and frozen thawed spermatozoa.
Proteins in fresh spermatozoa are represented by blue circles, proteins
in frozen thawed spermatozoa are represented by yellow circles. Proteins
were normalized and filtered by a fold change >4 with p = 1.15 × 10–18 and q = 3.6
× 10–8.
Figure 8
3D principal
component
analysis (PCA) of the variables affected by cryopreservation. Two
groups are clearly seen representing proteins in which amounts increase
after cryopreservation (yellow-orange) and those in which amounts
are reduced as a consequence of cryopreservation (blue-black). Variables
were prefiltered by standard deviation (S/Smax) 0.6 and
were then normalized and filtered by a fold change >4 with p = 1.15 × 10–18 and q = 3.6 × 10–8.
Figure 9
t-Distributed
stochastic
neighbor embedding (t-SNE), machine learning algorithm for visualization
based on Stochastic Neighbor Embedding. The t-SNE map shows the distribution
of the samples based on their proteome. After t-SNE clustering most
of the fresh samples and the frozen thawed samples are classified
in the same cluster. Fresh spermatozoa are shown in blue and frozen
thawed in yellow.
Heat map showing discriminant
variables between
fresh and frozen thawed spermatozoa. Proteins are classified following
hierarchical clustering. Blue marks correspond with fresh samples,
yellow marks correspond with frozen thawed samples. The heat map code
is present with red areas representing greater amounts of protein
and green areas lesser amounts of protein. Proteins were normalized
and filtered by a fold change >3.75 with p = 1.15
× 10–18 and q = 3.6 ×
10–8.Differences in the amount
of specific representative proteins under
two conditions, fresh and frozen thawed spermatozoa. Qlucore Omics
Explorer (Lund, Sweden https://qlucore.com) was used to compare differences in the relative amounts of proteins
based on spectral counts between fresh and frozen thawed spermatozoa.
Proteins in fresh spermatozoa are represented by blue circles, proteins
in frozen thawed spermatozoa are represented by yellow circles. Proteins
were normalized and filtered by a fold change >4 with p = 1.15 × 10–18 and q = 3.6
× 10–8.3D principal
component
analysis (PCA) of the variables affected by cryopreservation. Two
groups are clearly seen representing proteins in which amounts increase
after cryopreservation (yellow-orange) and those in which amounts
are reduced as a consequence of cryopreservation (blue-black). Variables
were prefiltered by standard deviation (S/Smax) 0.6 and
were then normalized and filtered by a fold change >4 with p = 1.15 × 10–18 and q = 3.6 × 10–8.t-Distributed
stochastic
neighbor embedding (t-SNE), machine learning algorithm for visualization
based on Stochastic Neighbor Embedding. The t-SNE map shows the distribution
of the samples based on their proteome. After t-SNE clustering most
of the fresh samples and the frozen thawed samples are classified
in the same cluster. Fresh spermatozoa are shown in blue and frozen
thawed in yellow.
Cryopreservation
Reduces the Amount of Nine Sperm Proteins
The amount of nine
sperm proteins was significantly reduced as a consequence of cryopreservation
(fold change >4, p = 6.40 × 10–10 and q = 7.51 × 10–9). These
proteins were superoxide dismutase (Cu–Zn), serine/threonine-protein phosphatase, an uncharacterized protein (A0A3Q2HAZ2) belonging to the
actin family, aldo-keto reductase family 1 member B, lysozyme B, U6 snRNA biogenesis phosphodiesterase
1, isocitrate dehydrogenase (NAD) subunit, mitochondrial, nucleoside diphosphate
kinase 7, and NEDD8 ubiquitin like modifier. The proteins most significantly reduced were aldo-keto
reductase family 1 member B (p = 2.2 ×
10–17) and superoxide dismutase (Cu–Zn) (p = 4.7 × 10–14) (Figure ).
Figure 10
Proteins which are more
abundant in fresh samples filtered by a fold change >4 with p = 6.4 × 10–10 and q = 7.51 × 10–9. Qlucore Omics Explorer (Lund,
Sweden https://qlucore.com)
was used to compare differences in the relative amounts of proteins
based on spectral counts between fresh and frozen thawed spermatozoa.
Proteins in fresh spermatozoa are represented by blue circles, proteins
in frozen thawed spermatozoa are represented by yellow.
Proteins which are more
abundant in fresh samples filtered by a fold change >4 with p = 6.4 × 10–10 and q = 7.51 × 10–9. Qlucore Omics Explorer (Lund,
Sweden https://qlucore.com)
was used to compare differences in the relative amounts of proteins
based on spectral counts between fresh and frozen thawed spermatozoa.
Proteins in fresh spermatozoa are represented by blue circles, proteins
in frozen thawed spermatozoa are represented by yellow.
Cryopreservation
Increases the Amount of 16 Proteins
Amounts of numerous proteins
were increased as a result of cryopreservation (Figure ). These were the RNA polymerase III subunit A, polyribonucleotide
nucleotidyltransferase 1, an uncharacterized transmembrane
protein similar to a putative spermatogenesis-associated protein 31C1
in humans (66.7% similarity), an uncharacterized
protein, kinesin family member 27, class II major
histocompatibility complex transactivator,G-protein
coupled receptor 25, transmembrane protein 5 like
protein, olfactory receptor, exosome
component 2, HSPV163, cyclic nucleotide
binding domain-containing protein, A kinase anchoring
protein 7, TBC1 domain family member, checkpoint with forkhead and ring finger domain protein,
and genome polyprotein. The most statistically significant
changes observed were in the amounts of transmembrane protein
5 like protein (p = 8.4 × 10–17) and the olfactory receptor (p = 8.5 × 10–15) (Figure ).
Figure 11
Direct comparison showing proteins which are
more abundant in frozen
thawed samples p = 8.00 × 10–10, q = 3.39 × 10–9 fold change
>4. Qlucore Omics Explorer (Lund, Sweden https://qlucore.com) was used to
compare differences in the relative amounts of proteins based on spectral
counts between fresh and frozen thawed spermatozoa. Proteins in fresh
spermatozoa are represented by blue circles, proteins in frozen thawed
spermatozoa are represented by yellow circles.
Direct comparison showing proteins which are
more abundant in frozen
thawed samples p = 8.00 × 10–10, q = 3.39 × 10–9 fold change
>4. Qlucore Omics Explorer (Lund, Sweden https://qlucore.com) was used to
compare differences in the relative amounts of proteins based on spectral
counts between fresh and frozen thawed spermatozoa. Proteins in fresh
spermatozoa are represented by blue circles, proteins in frozen thawed
spermatozoa are represented by yellow circles.
Cryopreservation Impairs Sperm Functionality
and Causes Oxidative Stress
Freezing and thawing caused a
major impact on sperm functionality. The percentage of total and linear
motile spermatozoa dropped after cryopreservation from 84.6 ±
1.7 and 62.5 ± 2.2 in fresh samples to 32.8 ± 2.9 and 22.5
± 1.1%, respectively, in frozen thawed samples (P < 0.0001) (Figure A,B). Significant reductions in sperm velocities were seen
after cryopreservation; circular velocity (VCL) dropped from 186.5
± 5.6 μm/s in fresh samples to 118.3 ± 14.6 μm/s
in thawed samples (P < 0.0001) (Figure D). Also, straight line (VSL)
and average path velocities (VAP) were equally affected by cryopreservation
(Figure E,F). The
percentage of spermatozoa showing detectable levels of the α,β-unsaturated
hydroxyalkenal, 4-hydroxynonenal (4-HNE) that is produced by lipid
peroxidation in cells, increased in cryopreserved samples, from 9.6
± 1.2% in fresh spermatozoa to 27.6 ± 3.5% after thawing
(p < 0.001) (Figure C).
Figure 12
Impact of cryopreservation on sperm functionality.
Stallions ejaculates were processed and analyzed as described in the Materials and Methods. Computer assisted sperm analysis
(CASA) was used to assess sperm motility (% total and linear motile
spermatozoa) and velocities, VCL (circular velocity) μm/s, VAP
(average path velocity) μm/s, and straight line velocity (VSL)
μm/s. Flow cytometry was used to determine spermatozoa experiencing
lipid peroxidation (4-hydroxynonenal 4-HNE). Data are presented as
means ± SEM. **** P < 0.0001, ** P < 0.01.
Impact of cryopreservation on sperm functionality.
Stallions ejaculates were processed and analyzed as described in the Materials and Methods. Computer assisted sperm analysis
(CASA) was used to assess sperm motility (% total and linear motile
spermatozoa) and velocities, VCL (circular velocity) μm/s, VAP
(average path velocity) μm/s, and straight line velocity (VSL)
μm/s. Flow cytometry was used to determine spermatozoa experiencing
lipid peroxidation (4-hydroxynonenal 4-HNE). Data are presented as
means ± SEM. **** P < 0.0001, ** P < 0.01.
Discussion
Cryopreservation
inflicts a major insult on stallion spermatozoa. Among other insults,
spermatozoa suffer osmotic stress at freezing and then again during
thawing. They also experience cryoprotectant toxicity. On average
all these factors mean that 50% or more of the spermatozoa initially
entering the process succumb to osmotic induced necrosis, mainly at
thawing.[39,40] The surviving population also experiences
changes arising due to the effect of osmotic stress in the mitochondria
causing increased production of mitochondrial reactive oxygen species
(ROS), exhaustion of antioxidants, and finally oxidative stress leading
to accelerated senescence of the spermatozoa and premature death.[41] Major changes in the stallion sperm proteome
as a consequence of cryopreservation were identified in line with
previous reports in different species.[11,15,17,18,42] The gene ontology (GO) terms enriched in proteins in higher amounts
in fresh spermatozoa reflected the importance of metabolism and redox
reactions in spermatozoa and the well documented importance of mitochondria
in these cells. To the contrary, in frozen thawed spermatozoa only
the KEGG pathway for RNA degradation was enriched. The specific proteins
that experienced highly significant changes as a result of cryopreservation
were also evaluated and thus can be discriminants for the major consequences
of stress imposed by the procedure. Cryopreservation caused a marked
and highly significant decrease in the amount of Superoxide dismutase
(Cu–Zn) (SOD1), an enzyme which forms part of the first line
of defense against oxidative stress in most organisms.[43−45] Although it has previously been reported that this enzyme is affected
by cryopreservation,[11,46] this is the first time that SOD1
is identified as a discriminating variable using bioinformatic analysis,
being one of the most highly significantly different proteins between
fresh and frozen thawed semen. This finding strongly supports the
theory that alterations in redox regulation and oxidative stress are
a major factor involved in cryodamage as also seen in the present
study, indicated by the increased level of 4-HNE in cryopreserved
spermatozoa. Other proteins with oxidoreductase activity were also
identified as discriminant variables. The aldo-keto-reductase family
1 member b (AKR1B1) was also identified using bioinformatic analysis
as discriminant for frozen thawed semen. Among the activities of this
protein, there are some with special importance in the context of
sperm biotechnologies. These include catalysis of the NADPH-dependent
reduction of carbonyls, detoxifying lipid-derived unsaturated carbonyls,
such as crotonaldehyde, 4-hydroxynonenal, trans-2-hexenal, trans-2,4-hexadienal
and glutathione-conjugates of carbonyls (GS-carbonyls) as well as
catalysis of the reduction of diverse phospholipid aldehydes such
as 1-palmitoyl-2-(5-oxovaleroyl)-sn-glycero-3-phosphoethanolamin
(POVPC) and related phospholipid aldehydes that are generated from
the oxidation of phosphatidylcholine and phosphatidylethanolamines.[47] In this context the role of this enzyme in detoxifying
4-HNE, a compound that has been characterized as extremely toxic for
the spermatozoa is particularly interesting,[48] and cryopreservation has been demonstrated to cause significant
increases in the content of 4-HNE in spermatozoa,[49] as also were evident in the present study. Thus, results
presented here establish a plausible molecular explanation to much
of the molecular damage occurring after cryopreservation, that is
the reduction of the amount of key antioxidant proteins. In view of
these findings it seems logical that spermatozoa containing higher
amounts of (AKR1B1) may survive better after cryopreservation. Lysozyme
B (LYZLB) was also present in higher amounts in fresh samples. According
to geneontology.org this
protein is involved in three biological processes: defense response
to Gram negative and positive bacterium and fusion of sperm to egg
plasma membrane involved in single fertilization.[50] This finding may constitute another factor that explains
the reduced fertility observed with cryopreserved spermatozoa.[51] A serine/threonine-protein phosphatase was also
more abundant in fresh sperm; BLAST revealed that this equine protein
has a 100% homology with the human serine/threonine-protein phosphatase
PP1- alpha catalytic subunit, a protein which is essential for spermatogenesis
and spermatozoa motility.[52] Reduction in
the amount of proteins after cryopreservation can be explained by
the well reported effects of freezing and thawing in the spermatozoa,
reduction of antioxidant proteins can be explained by exhaustion due
to the oxidative stress occurring during the procedure,[53] and reduction in the amounts of other proteins
can be explained due to protein degradation due to the osmotic stress
occurring during the freeze–thaw cycle.[13,15,18,54]Cryopreservation
caused a highly significant increase in the amounts of 12 proteins.
Two proteins were the most highly significantly enriched in thawed
samples. Transmembrane protein like 5 was increased
in thawed samples, probably due to the intense stress that the plasma
membrane of the spermatozoa experiences during cryopreservation.[39,55] The increase in the amount of the olfactory receptor in cryopreserved samples is also noteworthy. This is also a membrane
protein, a member of the class A rhodopsin-like family of G proteins
coupled receptors.[56,57] The most likely reason for the
increase in this membrane receptor in cryopreserved samples is the
intense disruption of the sperm membrane caused by the procedure.
Since spermatozoa are translationally and transcriptionally silent
cells, increases in the amounts of proteins are difficult to explain.
As previously indicated, the stress of cryopreservation may have facilitated
the exclusion of some proteins from the membrane and/or proteins that
have experienced post translational modifications such as phosphorylation.
Changes in the secondary and/or tertiary structure of the proteins
have been proposed as an explanation for the increase in amounts of
specific proteins after cryopreservation;[18] however, this issue warrants further research.In conclusion,
cryopreservation imposes a major change on the stallion sperm proteome.
These changes provide a molecular explanation for the reduced fertility
observed with the use of frozen thawed spermatozoa, and provide molecular
targets to be explored, with the aim of improving current cryopreservation
procedures. Cryopreservation impacts the major antioxidant protein
SOD1. Particular attention should be paid to the energetic metabolism
of the spermatozoa and the relation with redox regulation in these
cells in order to improve current cryopreservation procedures.
Authors: O A Bogle; K Kumar; C Attardo-Parrinello; S E M Lewis; J M Estanyol; J L Ballescà; R Oliva Journal: Andrology Date: 2016-11-17 Impact factor: 3.842
Authors: C Ortega Ferrusola; L Anel-López; J M Ortiz-Rodriguez; P Martin Muñoz; M Alvarez; P de Paz; J Masot; E Redondo; C Balao da Silva; J M Morrell; H Rodriguez Martinez; J A Tapia; M C Gil; L Anel; F J Peña Journal: Andrology Date: 2017-10-03 Impact factor: 3.842
Authors: Yasset Perez-Riverol; Attila Csordas; Jingwen Bai; Manuel Bernal-Llinares; Suresh Hewapathirana; Deepti J Kundu; Avinash Inuganti; Johannes Griss; Gerhard Mayer; Martin Eisenacher; Enrique Pérez; Julian Uszkoreit; Julianus Pfeuffer; Timo Sachsenberg; Sule Yilmaz; Shivani Tiwary; Jürgen Cox; Enrique Audain; Mathias Walzer; Andrew F Jarnuczak; Tobias Ternent; Alvis Brazma; Juan Antonio Vizcaíno Journal: Nucleic Acids Res Date: 2019-01-08 Impact factor: 16.971
Authors: Gemma Gaitskell-Phillips; Francisco E Martín-Cano; José M Ortiz-Rodríguez; Antonio Silva-Rodríguez; Eva da Silva-Álvarez; Maria C Gil; Cristina Ortega-Ferrusola; Fernando J Peña Journal: Data Brief Date: 2022-09-05