Literature DB >> 33655639

Improving the reliability of eDNA data interpretation.

Alfred Burian1,2,3, Quentin Mauvisseau1,4, Mark Bulling1, Sami Domisch5, Song Qian6, Michael Sweet1.   

Abstract

Global declines in biodiversity highlight the need to effectively monitor the density and distribution of threatened species. In recent years, molecular survey methods detecting DNA released by target-species into their environment (eDNA) have been rapidly on the rise. Despite providing new, cost-effective tools for conservation, eDNA-based methods are prone to errors. Best field and laboratory practices can mitigate some, but the risks of errors cannot be eliminated and need to be accounted for. Here, we synthesize recent advances in data processing tools that increase the reliability of interpretations drawn from eDNA data. We review advances in occupancy models to consider spatial data-structures and simultaneously assess rates of false positive and negative results. Further, we introduce process-based models and the integration of metabarcoding data as complementing approaches to increase the reliability of target-species assessments. These tools will be most effective when capitalizing on multi-source data sets collating eDNA with classical survey and citizen-science approaches, paving the way for more robust decision-making processes in conservation planning.
© 2021 The Authors. Molecular Ecology Resources published by John Wiley & Sons Ltd.

Keywords:  Bayesian analysis; barcoding; data fusion; detection probability; eDNA; false positives; metabarcoding; occupancy modelling; sources of error; species distribution modelling

Year:  2021        PMID: 33655639     DOI: 10.1111/1755-0998.13367

Source DB:  PubMed          Journal:  Mol Ecol Resour        ISSN: 1755-098X            Impact factor:   7.090


  3 in total

Review 1.  A review of applications of environmental DNA for reptile conservation and management.

Authors:  Bethany Nordstrom; Nicola Mitchell; Margaret Byrne; Simon Jarman
Journal:  Ecol Evol       Date:  2022-06-05       Impact factor: 3.167

2.  Comparison of materials for rapid passive collection of environmental DNA.

Authors:  Cindy Bessey; Yuan Gao; Yen Bach Truong; Haylea Miller; Simon Neil Jarman; Oliver Berry
Journal:  Mol Ecol Resour       Date:  2022-06-01       Impact factor: 8.678

3.  Dnabarcoder: An open-source software package for analysing and predicting DNA sequence similarity cutoffs for fungal sequence identification.

Authors:  Duong Vu; R Henrik Nilsson; Gerard J M Verkley
Journal:  Mol Ecol Resour       Date:  2022-06-20       Impact factor: 8.678

  3 in total

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