Literature DB >> 33655005

Tracking Root Interactions System (TRIS) Experiment and Quality Control.

Hassan Massalha1, Elisa Korenblum1, Orr H Shapiro2, Asaph Aharoni1.   

Abstract

Soil organisms are diverse taxonomically and functionally. This ecosystem experiences highly complex networks of interactions, but may also present functionally independent entities. Plant roots, a metabolically active hotspot in the soil, take an essential part in shaping the rhizosphere. Tracking the dynamics of root-microbe interactions at high spatial resolution is currently limited due to methodological intricacy. In this study, we developed a novel microfluidics-based device enabling direct imaging of root-bacteria interactions in real time.
Copyright © 2019 The Authors; exclusive licensee Bio-protocol LLC.

Entities:  

Keywords:  Arabidopsis thaliana; Bacillus subtilis; Live-imaging microscopy; Microbial community dynamics; Root-bacteria interactions; Tracking root interactions system (TRIS)

Year:  2019        PMID: 33655005      PMCID: PMC7854226          DOI: 10.21769/BioProtoc.3211

Source DB:  PubMed          Journal:  Bio Protoc        ISSN: 2331-8325


  12 in total

1.  The RootChip: an integrated microfluidic chip for plant science.

Authors:  Guido Grossmann; Woei-Jiun Guo; David W Ehrhardt; Wolf B Frommer; Rene V Sit; Stephen R Quake; Matthias Meier
Journal:  Plant Cell       Date:  2011-12-20       Impact factor: 11.277

Review 2.  Soil-on-a-Chip: microfluidic platforms for environmental organismal studies.

Authors:  Claire E Stanley; Guido Grossmann; Xavier Casadevall i Solvas; Andrew J deMello
Journal:  Lab Chip       Date:  2016-01-21       Impact factor: 6.799

Review 3.  Phytoremediation: plant-endophyte partnerships take the challenge.

Authors:  Nele Weyens; Daniel van der Lelie; Safiyh Taghavi; Jaco Vangronsveld
Journal:  Curr Opin Biotechnol       Date:  2009-03-25       Impact factor: 9.740

4.  Properties of bacterial endophytes and their proposed role in plant growth.

Authors:  Pablo R Hardoim; Leo S van Overbeek; Jan Dirk van Elsas
Journal:  Trends Microbiol       Date:  2008-09-12       Impact factor: 17.079

Review 5.  The use of beneficial microbial endophytes for plant biomass and stress tolerance improvement.

Authors:  Chuansheng Mei; Barry S Flinn
Journal:  Recent Pat Biotechnol       Date:  2010-01

6.  Soft lithography for micro- and nanoscale patterning.

Authors:  Dong Qin; Younan Xia; George M Whitesides
Journal:  Nat Protoc       Date:  2010-02-18       Impact factor: 13.491

Review 7.  Microfluidic platforms for plant cells studies.

Authors:  A Sanati Nezhad
Journal:  Lab Chip       Date:  2014-09-07       Impact factor: 6.799

8.  Fiji: an open-source platform for biological-image analysis.

Authors:  Johannes Schindelin; Ignacio Arganda-Carreras; Erwin Frise; Verena Kaynig; Mark Longair; Tobias Pietzsch; Stephan Preibisch; Curtis Rueden; Stephan Saalfeld; Benjamin Schmid; Jean-Yves Tinevez; Daniel James White; Volker Hartenstein; Kevin Eliceiri; Pavel Tomancak; Albert Cardona
Journal:  Nat Methods       Date:  2012-06-28       Impact factor: 28.547

9.  Plant chip for high-throughput phenotyping of Arabidopsis.

Authors:  Huawei Jiang; Zhen Xu; Maneesha R Aluru; Liang Dong
Journal:  Lab Chip       Date:  2014-04-07       Impact factor: 6.799

10.  Native root-associated bacteria rescue a plant from a sudden-wilt disease that emerged during continuous cropping.

Authors:  Rakesh Santhanam; Van Thi Luu; Arne Weinhold; Jay Goldberg; Youngjoo Oh; Ian T Baldwin
Journal:  Proc Natl Acad Sci U S A       Date:  2015-08-25       Impact factor: 11.205

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  1 in total

Review 1.  Microfluidics-Based Bioassays and Imaging of Plant Cells.

Authors:  Naoki Yanagisawa; Elena Kozgunova; Guido Grossmann; Anja Geitmann; Tetsuya Higashiyama
Journal:  Plant Cell Physiol       Date:  2021-11-10       Impact factor: 4.927

  1 in total

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