Literature DB >> 33654708

Isolation and Characterization of Live Yeast Cells from Ancient Clay Vessels.

Tzemach Aouizerat1, Aren M Maeir2, Yitzhak Paz3, Yuval Gadot4, Amir Szitenberg5, Sivan Alkalay-Oren1, Shunit Coppenhagen-Glazer1, Michael Klutstein1, Ronen Hazan1.   

Abstract

Ancient fermented food has been studied mainly based on residue analysis and recipes and reconstruction attempts were performed using modern domesticated yeast. Furthermore, microorganisms which participated in fermentation were studied using ancient-DNA techniques. In a recent paper, we presented a novel approach based on the hypothesis that enriched yeast populations in fermented beverages could have become the dominant species in storage vessels and their descendants could be isolated and studied today. Here we present a pipeline for isolation of yeast from clay vessels uncovered in archeological sites and transferred to the microbiology lab where they can be isolated and characterized. This method opens new avenues for experimental archeology and enables attempts to recreate ancient food and beverages using the original microorganisms.
Copyright © 2020 The Authors; exclusive licensee Bio-protocol LLC.

Entities:  

Keywords:  Ancient pottery vessels; Bio-archeology; Experimental archaeology; Fermentation; Food; Yeast; beverages

Year:  2020        PMID: 33654708      PMCID: PMC7842698          DOI: 10.21769/BioProtoc.3473

Source DB:  PubMed          Journal:  Bio Protoc        ISSN: 2331-8325


  10 in total

1.  Tuberculosis: from prehistory to Robert Koch, as revealed by ancient DNA.

Authors:  Helen D Donoghue; Mark Spigelman; Charles L Greenblatt; Galit Lev-Maor; Gila Kahila Bar-Gal; Carney Matheson; Kim Vernon; Andreas G Nerlich; Albert R Zink
Journal:  Lancet Infect Dis       Date:  2004-09       Impact factor: 25.071

2.  Author Correction: Ancient hepatitis B viruses from the Bronze Age to the Medieval period.

Authors:  Barbara Muhlemann; Terry C Jones; Peter de Barros Damgaard; Morten E Allentoft; Irina Shevnina; Andrey Logvin; Emma Usmanova; Irina P Panyushkina; Bazartseren Boldgiv; Tsevel Bazartseren; Kadicha Tashbaeva; Victor Merz; Nina Lau; Vaclav Smrčka; Dmitry Voyakin; Egor Kitov; Andrey Epimakhov; Dalia Pokutta; Magdolna Vicze; T Douglas Price; Vyacheslav Moiseyev; Anders J Hansen; Ludovic Orlando; Simon Rasmussen; Martin Sikora; Lasse Vinner; Albert D M E Osterhaus; Derek J Smith; Dieter Glebe; Ron A M Fouchier; Christian Drosten; Karl-Goran Sjogren; Kristian Kristiansen; Eske Willerslev
Journal:  Nature       Date:  2018-10       Impact factor: 49.962

Review 3.  Microbial Genomics of Ancient Plagues and Outbreaks.

Authors:  Cheryl P Andam; Colin J Worby; Qiuzhi Chang; Michael G Campana
Journal:  Trends Microbiol       Date:  2016-09-08       Impact factor: 17.079

4.  A whole-genome assembly of Drosophila.

Authors:  E W Myers; G G Sutton; A L Delcher; I M Dew; D P Fasulo; M J Flanigan; S A Kravitz; C M Mobarry; K H Reinert; K A Remington; E L Anson; R A Bolanos; H H Chou; C M Jordan; A L Halpern; S Lonardi; E M Beasley; R C Brandon; L Chen; P J Dunn; Z Lai; Y Liang; D R Nusskern; M Zhan; Q Zhang; X Zheng; G M Rubin; M D Adams; J C Venter
Journal:  Science       Date:  2000-03-24       Impact factor: 47.728

5.  A rapid, efficient method for isolating DNA from yeast.

Authors:  C Holm; D W Meeks-Wagner; W L Fangman; D Botstein
Journal:  Gene       Date:  1986       Impact factor: 3.688

6.  Bread, beer and wine: Saccharomyces cerevisiae diversity reflects human history.

Authors:  Jean-Luc Legras; Didier Merdinoglu; Jean-Marie Cornuet; Francis Karst
Journal:  Mol Ecol       Date:  2007-05       Impact factor: 6.185

7.  Evidence for S. cerevisiae fermentation in ancient wine.

Authors:  Duccio Cavalieri; Patrick E McGovern; Daniel L Hartl; Robert Mortimer; Mario Polsinelli
Journal:  J Mol Evol       Date:  2003       Impact factor: 2.395

8.  Isolation and Characterization of Live Yeast Cells from Ancient Vessels as a Tool in Bio-Archaeology.

Authors:  Michael Klutstein; Ronen Hazan; Tzemach Aouizerat; Itai Gutman; Yitzhak Paz; Aren M Maeir; Yuval Gadot; Daniel Gelman; Amir Szitenberg; Elyashiv Drori; Ania Pinkus; Miriam Schoemann; Rachel Kaplan; Tziona Ben-Gedalya; Shunit Coppenhagen-Glazer; Eli Reich; Amijai Saragovi; Oded Lipschits
Journal:  mBio       Date:  2019-04-30       Impact factor: 7.867

9.  Rapid isolation of yeast genomic DNA: Bust n' Grab.

Authors:  Susanna Harju; Halyna Fedosyuk; Kenneth R Peterson
Journal:  BMC Biotechnol       Date:  2004-04-21       Impact factor: 2.563

10.  Trimmomatic: a flexible trimmer for Illumina sequence data.

Authors:  Anthony M Bolger; Marc Lohse; Bjoern Usadel
Journal:  Bioinformatics       Date:  2014-04-01       Impact factor: 6.937

  10 in total
  2 in total

1.  Water is a preservative of microbes.

Authors:  John E Hallsworth
Journal:  Microb Biotechnol       Date:  2021-12-22       Impact factor: 5.813

2.  Comparison of Two Aspergillus oryzae Genomes From Different Clades Reveals Independent Evolution of Alpha-Amylase Duplication, Variation in Secondary Metabolism Genes, and Differences in Primary Metabolism.

Authors:  Katherine Chacón-Vargas; Colin O McCarthy; Dasol Choi; Long Wang; Jae-Hyuk Yu; John G Gibbons
Journal:  Front Microbiol       Date:  2021-07-13       Impact factor: 5.640

  2 in total

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