Literature DB >> 33653954

Raf promotes dimerization of the Ras G-domain with increased allosteric connections.

Morgan R Packer1, Jillian A Parker1, Jean K Chung2, Zhenlu Li3, Young Kwang Lee2, Trinity Cookis1, Hugo Guterres1, Steven Alvarez2,4, Md Amin Hossain1, Daniel P Donnelly1, Jeffrey N Agar1,5, Lee Makowski6, Matthias Buck3, Jay T Groves2, Carla Mattos7.   

Abstract

Ras dimerization is critical for Raf activation. Here we show that the Ras binding domain of Raf (Raf-RBD) induces robust Ras dimerization at low surface densities on supported lipid bilayers and, to a lesser extent, in solution as observed by size exclusion chromatography and confirmed by SAXS. Community network analysis based on molecular dynamics simulations shows robust allosteric connections linking the two Raf-RBD D113 residues located in the Galectin scaffold protein binding site of each Raf-RBD molecule and 85 Å apart on opposite ends of the dimer complex. Our results suggest that Raf-RBD binding and Ras dimerization are concerted events that lead to a high-affinity signaling complex at the membrane that we propose is an essential unit in the macromolecular assembly of higher order Ras/Raf/Galectin complexes important for signaling through the Ras/Raf/MEK/ERK pathway.

Entities:  

Keywords:  Raf; Ras; allosteric connections; dimerization

Year:  2021        PMID: 33653954     DOI: 10.1073/pnas.2015648118

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  10 in total

Review 1.  Self-assemblies of Rab- and Arf-family small GTPases on lipid bilayers in membrane tethering.

Authors:  Joji Mima
Journal:  Biophys Rev       Date:  2021-07-12

2.  Structural insights into Ras regulation by SIN1.

Authors:  Yuyuan Zheng; Lei Ding; Xianhui Meng; Meg Potter; Alison L Kearney; Jie Zhang; Jie Sun; David E James; Guang Yang; Chun Zhou
Journal:  Proc Natl Acad Sci U S A       Date:  2022-05-06       Impact factor: 12.779

Review 3.  Ras Multimers on the Membrane: Many Ways for a Heart-to-Heart Conversation.

Authors:  E Sila Ozdemir; Anna M Koester; Xiaolin Nan
Journal:  Genes (Basel)       Date:  2022-01-25       Impact factor: 4.096

4.  Monoubiquitination of KRAS at Lysine104 and Lysine147 Modulates Its Dynamics and Interaction with Partner Proteins.

Authors:  Vinay V Nair; Guowei Yin; Jerry Zhang; John F Hancock; Sharon L Campbell; Alemayehu A Gorfe
Journal:  J Phys Chem B       Date:  2021-04-30       Impact factor: 2.991

5.  A Structure is Worth a Thousand Words: New Insights for RAS and RAF Regulation.

Authors:  Dhirendra K Simanshu; Deborah K Morrison
Journal:  Cancer Discov       Date:  2022-04-01       Impact factor: 39.397

6.  Women in science symposium.

Authors:  David J Crossman; Maria Cristina Nonato
Journal:  Biophys Rev       Date:  2021-11-15

Review 7.  Lipid Profiles of RAS Nanoclusters Regulate RAS Function.

Authors:  Yong Zhou; John F Hancock
Journal:  Biomolecules       Date:  2021-09-30

8.  Identification of the nucleotide-free state as a therapeutic vulnerability for inhibition of selected oncogenic RAS mutants.

Authors:  Imran Khan; Akiko Koide; Mariyam Zuberi; Gayatri Ketavarapu; Eric Denbaum; Kai Wen Teng; J Matthew Rhett; Russell Spencer-Smith; G Aaron Hobbs; Ernest Ramsay Camp; Shohei Koide; John P O'Bryan
Journal:  Cell Rep       Date:  2022-02-08       Impact factor: 9.423

Review 9.  RAS Nanoclusters: Dynamic Signaling Platforms Amenable to Therapeutic Intervention.

Authors:  Que N Van; Priyanka Prakash; Rebika Shrestha; Trent E Balius; Thomas J Turbyville; Andrew G Stephen
Journal:  Biomolecules       Date:  2021-03-03

Review 10.  RAS Nanoclusters Selectively Sort Distinct Lipid Headgroups and Acyl Chains.

Authors:  Yong Zhou; Alemayehu A Gorfe; John F Hancock
Journal:  Front Mol Biosci       Date:  2021-06-17
  10 in total

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