Literature DB >> 33651880

Single-cell analyses identify circulating anti-tumor CD8 T cells and markers for their enrichment.

Kristen E Pauken1,2, Osmaan Shahid3, Kaitlyn A Lagattuta3,4, Kelly M Mahuron5, Jacob M Luber3,6,7, Margaret M Lowe8, Linglin Huang3,9, Conor Delaney3, Jaclyn M Long1,2,10, Megan E Fung3, Kathleen Newcomer3, Katy K Tsai11,12, Melissa Chow12, Samantha Guinn1,2, Juhi R Kuchroo1,2, Kelly P Burke1,2,13, Jason M Schenkel14,15, Michael D Rosenblum8, Adil I Daud11, Arlene H Sharpe1,2,6, Meromit Singer1,3,6.   

Abstract

The ability to monitor anti-tumor CD8+ T cell responses in the blood has tremendous therapeutic potential. Here, we used paired single-cell RNA and TCR sequencing to detect and characterize "tumor-matching" (TM) CD8+ T cells in the blood of mice with MC38 tumors or melanoma patients using the TCR as a molecular barcode. TM cells showed increased activation compared with nonmatching T cells in blood and were less exhausted than matching cells in tumors. Importantly, PD-1, which has been used to identify putative circulating anti-tumor CD8+ T cells, showed poor sensitivity for identifying TM cells. By leveraging the transcriptome, we identified candidate cell surface markers for TM cells in mice and patients and validated NKG2D, CD39, and CX3CR1 in mice. These data show that the TCR can be used to identify tumor-relevant cells for characterization, reveal unique transcriptional properties of TM cells, and develop marker panels for tracking and analysis of these cells.
© 2021 Pauken et al.

Entities:  

Mesh:

Substances:

Year:  2021        PMID: 33651880      PMCID: PMC7933992          DOI: 10.1084/jem.20200920

Source DB:  PubMed          Journal:  J Exp Med        ISSN: 0022-1007            Impact factor:   14.307


  78 in total

1.  NKG2D induces Mcl-1 expression and mediates survival of CD8 memory T cell precursors via phosphatidylinositol 3-kinase.

Authors:  Felix M Wensveen; Maja Lenartic; Vedrana Jelencic; Niels A W Lemmermann; Anja ten Brinke; Stipan Jonjic; Bojan Polic
Journal:  J Immunol       Date:  2013-06-26       Impact factor: 5.422

2.  Prospective identification of neoantigen-specific lymphocytes in the peripheral blood of melanoma patients.

Authors:  Alena Gros; Maria R Parkhurst; Eric Tran; Anna Pasetto; Paul F Robbins; Sadia Ilyas; Todd D Prickett; Jared J Gartner; Jessica S Crystal; Ilana M Roberts; Kasia Trebska-McGowan; John R Wunderlich; James C Yang; Steven A Rosenberg
Journal:  Nat Med       Date:  2016-02-22       Impact factor: 53.440

3.  Phenotype, function, and gene expression profiles of programmed death-1(hi) CD8 T cells in healthy human adults.

Authors:  Jaikumar Duraiswamy; Chris C Ibegbu; David Masopust; Joseph D Miller; Koichi Araki; Gregory H Doho; Pramila Tata; Satish Gupta; Michael J Zilliox; Helder I Nakaya; Bali Pulendran; W Nicholas Haining; Gordon J Freeman; Rafi Ahmed
Journal:  J Immunol       Date:  2011-03-07       Impact factor: 5.422

4.  Network analysis reveals centrally connected genes and pathways involved in CD8+ T cell exhaustion versus memory.

Authors:  Travis A Doering; Alison Crawford; Jill M Angelosanto; Michael A Paley; Carly G Ziegler; E John Wherry
Journal:  Immunity       Date:  2012-11-15       Impact factor: 31.745

5.  Bystander CD8+ T cells are abundant and phenotypically distinct in human tumour infiltrates.

Authors:  Yannick Simoni; Etienne Becht; Michael Fehlings; Chiew Yee Loh; Si-Lin Koo; Karen Wei Weng Teng; Joe Poh Sheng Yeong; Rahul Nahar; Tong Zhang; Hassen Kared; Kaibo Duan; Nicholas Ang; Michael Poidinger; Yin Yeng Lee; Anis Larbi; Alexis J Khng; Emile Tan; Cherylin Fu; Ronnie Mathew; Melissa Teo; Wan Teck Lim; Chee Keong Toh; Boon-Hean Ong; Tina Koh; Axel M Hillmer; Angela Takano; Tony Kiat Hon Lim; Eng Huat Tan; Weiwei Zhai; Daniel S W Tan; Iain Beehuat Tan; Evan W Newell
Journal:  Nature       Date:  2018-05-16       Impact factor: 49.962

Review 6.  The diverse functions of the PD1 inhibitory pathway.

Authors:  Arlene H Sharpe; Kristen E Pauken
Journal:  Nat Rev Immunol       Date:  2017-11-13       Impact factor: 53.106

7.  Combinatorial prediction of marker panels from single-cell transcriptomic data.

Authors:  Conor Delaney; Alexandra Schnell; Louis V Cammarata; Aaron Yao-Smith; Aviv Regev; Vijay K Kuchroo; Meromit Singer
Journal:  Mol Syst Biol       Date:  2019-10       Impact factor: 11.429

8.  Neoadjuvant immunotherapy leads to pathological responses in MMR-proficient and MMR-deficient early-stage colon cancers.

Authors:  Lorenzo F Fanchi; Krijn K Dijkstra; José G Van den Berg; Emile E Voest; John B Haanen; Myriam Chalabi; Arend G Aalbers; Karolina Sikorska; Marta Lopez-Yurda; Cecile Grootscholten; Geerard L Beets; Petur Snaebjornsson; Monique Maas; Marjolijn Mertz; Vivien Veninga; Gergana Bounova; Annegien Broeks; Regina G Beets-Tan; Thomas R de Wijkerslooth; Anja U van Lent; Hendrik A Marsman; Elvira Nuijten; Niels F Kok; Maria Kuiper; Wieke H Verbeek; Marleen Kok; Monique E Van Leerdam; Ton N Schumacher
Journal:  Nat Med       Date:  2020-04-06       Impact factor: 53.440

9.  Combination anti-CTLA-4 plus anti-PD-1 checkpoint blockade utilizes cellular mechanisms partially distinct from monotherapies.

Authors:  Spencer C Wei; Nana-Ama A S Anang; Roshan Sharma; Miles C Andrews; Alexandre Reuben; Jacob H Levine; Alexandria P Cogdill; James J Mancuso; Jennifer A Wargo; Dana Pe'er; James P Allison
Journal:  Proc Natl Acad Sci U S A       Date:  2019-10-21       Impact factor: 11.205

10.  Immune-awakening revealed by peripheral T cell dynamics after one cycle of immunotherapy.

Authors:  Sara Valpione; Elena Galvani; Joshua Tweedy; Piyushkumar A Mundra; Antonia Banyard; Philippa Middlehurst; Jeff Barry; Sarah Mills; Zena Salih; John Weightman; Avinash Gupta; Gabriela Gremel; Franziska Baenke; Nathalie Dhomen; Paul C Lorigan; Richard Marais
Journal:  Nat Cancer       Date:  2020-02-10
View more
  18 in total

Review 1.  TCR-sequencing in cancer and autoimmunity: barcodes and beyond.

Authors:  Kristen E Pauken; Kaitlyn A Lagattuta; Benjamin Y Lu; Liliana E Lucca; Adil I Daud; David A Hafler; Harriet M Kluger; Soumya Raychaudhuri; Arlene H Sharpe
Journal:  Trends Immunol       Date:  2022-01-25       Impact factor: 16.687

2.  Immune checkpoint blockade sensitivity and progression-free survival associates with baseline CD8+ T cell clone size and cytotoxicity.

Authors:  Robert A Watson; Orion Tong; Rosalin Cooper; Chelsea A Taylor; Piyush K Sharma; Alba Verge de Los Aires; Elise A Mahé; Hélène Ruffieux; Isar Nassiri; Mark R Middleton; Benjamin P Fairfax
Journal:  Sci Immunol       Date:  2021-10-01

3.  Circulating Lymphocytes Reflect the Local Immune Response in Patients with Colorectal Carcinoma.

Authors:  Johanna Waidhauser; Pia Nerlinger; Florian Sommer; Sebastian Wolf; Stefan Eser; Phillip Löhr; Andreas Rank; Bruno Märkl
Journal:  Diagnostics (Basel)       Date:  2022-06-07

Review 4.  Research Progress of Cell Lineage Tracing and Single-Cell Sequencing Technology in Malignant Skin Tumors.

Authors:  Ang Li; Baoyi Liu; Jingkai Xu; Yong Cui
Journal:  Front Surg       Date:  2022-06-16

5.  Pinpointing the tumor-specific T cells via TCR clusters.

Authors:  Mikhail M Goncharov; Ekaterina A Bryushkova; Nikita I Sharaev; Valeria D Skatova; Anastasiya M Baryshnikova; George V Sharonov; Vadim Karnaukhov; Maria T Vakhitova; Igor V Samoylenko; Lev V Demidov; Sergey Lukyanov; Dmitriy M Chudakov; Ekaterina O Serebrovskaya
Journal:  Elife       Date:  2022-04-04       Impact factor: 8.713

6.  Peripheral T cell cytotoxicity predicts the efficacy of anti-PD-1 therapy for advanced non-small cell lung cancer patients.

Authors:  Kota Iwahori; Takeshi Uenami; Yukihiro Yano; Toshihiko Ueda; Mari Tone; Yujiro Naito; Yasuhiko Suga; Kiyoharu Fukushima; Takayuki Shiroyama; Kotaro Miyake; Shohei Koyama; Haruhiko Hirata; Izumi Nagatomo; Hiroshi Kida; Masahide Mori; Yoshito Takeda; Atsushi Kumanogoh; Hisashi Wada
Journal:  Sci Rep       Date:  2022-10-19       Impact factor: 4.996

7.  Multi-Parameter Quantitative Imaging of Tumor Microenvironments Reveals Perivascular Immune Niches Associated With Anti-Tumor Immunity.

Authors:  Caleb R Stoltzfus; Ramya Sivakumar; Leo Kunz; Brandy E Olin Pope; Elena Menietti; Dario Speziale; Roberto Adelfio; Marina Bacac; Sara Colombetti; Mario Perro; Michael Y Gerner
Journal:  Front Immunol       Date:  2021-08-05       Impact factor: 7.561

8.  Multiplexed single-cell pathology reveals the association of CD8 T-cell heterogeneity with prognostic outcomes in renal cell carcinoma.

Authors:  Tetsushi Murakami; Nobuyuki Tanaka; Kimiharu Takamatsu; Kyohei Hakozaki; Keishiro Fukumoto; Tsukasa Masuda; Shuji Mikami; Toshiaki Shinojima; Kazuhiro Kakimi; Tatsuhiko Tsunoda; Kazuaki Sawada; Takeshi Imamura; Ryuichi Mizuno; Mototsugu Oya
Journal:  Cancer Immunol Immunother       Date:  2021-07-14       Impact factor: 6.968

Review 9.  Emerging concepts in PD-1 checkpoint biology.

Authors:  Kristen E Pauken; James A Torchia; Apoorvi Chaudhri; Arlene H Sharpe; Gordon J Freeman
Journal:  Semin Immunol       Date:  2021-05-15       Impact factor: 11.130

10.  Circulating clonally expanded T cells reflect functions of tumor-infiltrating T cells.

Authors:  Harriet M Kluger; David A Hafler; Liliana E Lucca; Pierre-Paul Axisa; Benjamin Lu; Brian Harnett; Shlomit Jessel; Le Zhang; Khadir Raddassi; Lin Zhang; Kelly Olino; James Clune; Meromit Singer
Journal:  J Exp Med       Date:  2021-04-05       Impact factor: 14.307

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.