Literature DB >> 33648534

Single-cell RNA sequencing in cancer research.

Yijie Zhang1,2,3, Dan Wang2, Miao Peng2, Le Tang2, Jiawei Ouyang2, Fang Xiong2, Can Guo2, Yanyan Tang1, Yujuan Zhou1, Qianjin Liao1, Xu Wu1,2, Hui Wang1, Jianjun Yu1, Yong Li4, Xiaoling Li2, Guiyuan Li1,2,3, Zhaoyang Zeng1,2,3, Yixin Tan5, Wei Xiong6,7,8.   

Abstract

Single-cell RNA sequencing (scRNA-seq), a technology that analyzes transcriptomes of complex tissues at single-cell levels, can identify differential gene expression and epigenetic factors caused by mutations in unicellular genomes, as well as new cell-specific markers and cell types. scRNA-seq plays an important role in various aspects of tumor research. It reveals the heterogeneity of tumor cells and monitors the progress of tumor development, thereby preventing further cellular deterioration. Furthermore, the transcriptome analysis of immune cells in tumor tissue can be used to classify immune cells, their immune escape mechanisms and drug resistance mechanisms, and to develop effective clinical targeted therapies combined with immunotherapy. Moreover, this method enables the study of intercellular communication and the interaction of tumor cells and non-malignant cells to reveal their role in carcinogenesis. scRNA-seq provides new technical means for further development of tumor research and is expected to make significant breakthroughs in this field. This review focuses on the principles of scRNA-seq, with an emphasis on the application of scRNA-seq in tumor heterogeneity, pathogenesis, and treatment.

Entities:  

Keywords:  Immune escape; Invasion and metastasis; Single‐cell RNA sequencing; Tumor heterogeneity; Tumor microenvironment

Year:  2021        PMID: 33648534     DOI: 10.1186/s13046-021-01874-1

Source DB:  PubMed          Journal:  J Exp Clin Cancer Res        ISSN: 0392-9078


  58 in total

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Journal:  N Engl J Med       Date:  2015-02-12       Impact factor: 91.245

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Authors:  Shixin Duan; Weihua Guo; Zuxing Xu; Yunbo He; Chuting Liang; Yongzhen Mo; Yian Wang; Fang Xiong; Can Guo; Yong Li; Xiaoling Li; Guiyuan Li; Zhaoyang Zeng; Wei Xiong; Fuyan Wang
Journal:  Mol Cancer       Date:  2019-02-27       Impact factor: 27.401

Review 3.  Mechanisms of vasculogenic mimicry in hypoxic tumor microenvironments.

Authors:  Xiaoxu Wei; Yunhua Chen; Xianjie Jiang; Miao Peng; Yiduo Liu; Yongzhen Mo; Daixi Ren; Yuze Hua; Boyao Yu; Yujuan Zhou; Qianjin Liao; Hui Wang; Bo Xiang; Ming Zhou; Xiaoling Li; Guiyuan Li; Yong Li; Wei Xiong; Zhaoyang Zeng
Journal:  Mol Cancer       Date:  2021-01-04       Impact factor: 27.401

Review 4.  Metabolic crosstalk in the tumor microenvironment regulates antitumor immunosuppression and immunotherapy resisitance.

Authors:  Fang Wei; Dan Wang; Junyuan Wei; Niwen Tang; Le Tang; Fang Xiong; Can Guo; Ming Zhou; Xiaoling Li; Guiyuan Li; Wei Xiong; Shanshan Zhang; Zhaoyang Zeng
Journal:  Cell Mol Life Sci       Date:  2020-07-11       Impact factor: 9.261

5.  Intratumor heterogeneity in localized lung adenocarcinomas delineated by multiregion sequencing.

Authors:  Jianjun Zhang; Junya Fujimoto; Jianhua Zhang; David C Wedge; Xingzhi Song; Jiexin Zhang; Sahil Seth; Chi-Wan Chow; Yu Cao; Curtis Gumbs; Kathryn A Gold; Neda Kalhor; Latasha Little; Harshad Mahadeshwar; Cesar Moran; Alexei Protopopov; Huandong Sun; Jiabin Tang; Xifeng Wu; Yuanqing Ye; William N William; J Jack Lee; John V Heymach; Waun Ki Hong; Stephen Swisher; Ignacio I Wistuba; P Andrew Futreal
Journal:  Science       Date:  2014-10-10       Impact factor: 47.728

6.  Identification of genomic alterations in nasopharyngeal carcinoma and nasopharyngeal carcinoma-derived Epstein-Barr virus by whole-genome sequencing.

Authors:  Chaofeng Tu; Zhaoyang Zeng; Peng Qi; Xiayu Li; Can Guo; Fang Xiong; Bo Xiang; Ming Zhou; Qianjin Liao; Jianjun Yu; Yong Li; Xiaoling Li; Guiyuan Li; Wei Xiong
Journal:  Carcinogenesis       Date:  2018-12-31       Impact factor: 4.944

7.  Tracking the Evolution of Non-Small-Cell Lung Cancer.

Authors:  Mariam Jamal-Hanjani; Gareth A Wilson; Nicholas McGranahan; Nicolai J Birkbak; Thomas B K Watkins; Selvaraju Veeriah; Seema Shafi; Diana H Johnson; Richard Mitter; Rachel Rosenthal; Max Salm; Stuart Horswell; Mickael Escudero; Nik Matthews; Andrew Rowan; Tim Chambers; David A Moore; Samra Turajlic; Hang Xu; Siow-Ming Lee; Martin D Forster; Tanya Ahmad; Crispin T Hiley; Christopher Abbosh; Mary Falzon; Elaine Borg; Teresa Marafioti; David Lawrence; Martin Hayward; Shyam Kolvekar; Nikolaos Panagiotopoulos; Sam M Janes; Ricky Thakrar; Asia Ahmed; Fiona Blackhall; Yvonne Summers; Rajesh Shah; Leena Joseph; Anne M Quinn; Phil A Crosbie; Babu Naidu; Gary Middleton; Gerald Langman; Simon Trotter; Marianne Nicolson; Hardy Remmen; Keith Kerr; Mahendran Chetty; Lesley Gomersall; Dean A Fennell; Apostolos Nakas; Sridhar Rathinam; Girija Anand; Sajid Khan; Peter Russell; Veni Ezhil; Babikir Ismail; Melanie Irvin-Sellers; Vineet Prakash; Jason F Lester; Malgorzata Kornaszewska; Richard Attanoos; Haydn Adams; Helen Davies; Stefan Dentro; Philippe Taniere; Brendan O'Sullivan; Helen L Lowe; John A Hartley; Natasha Iles; Harriet Bell; Yenting Ngai; Jacqui A Shaw; Javier Herrero; Zoltan Szallasi; Roland F Schwarz; Aengus Stewart; Sergio A Quezada; John Le Quesne; Peter Van Loo; Caroline Dive; Allan Hackshaw; Charles Swanton
Journal:  N Engl J Med       Date:  2017-04-26       Impact factor: 91.245

8.  Genomic Analysis of Tumor Microenvironment Immune Types across 14 Solid Cancer Types: Immunotherapeutic Implications.

Authors:  Yu-Pei Chen; Yu Zhang; Jia-Wei Lv; Ying-Qin Li; Ya-Qin Wang; Qing-Mei He; Xiao-Jing Yang; Ying Sun; Yan-Ping Mao; Jing-Ping Yun; Na Liu; Jun Ma
Journal:  Theranostics       Date:  2017-08-22       Impact factor: 11.556

9.  GPC6 Promotes Cell Proliferation, Migration, and Invasion in Nasopharyngeal Carcinoma.

Authors:  Chunmei Fan; Chaofeng Tu; Peng Qi; Can Guo; Bo Xiang; Ming Zhou; Xiayu Li; Xu Wu; Xiaoling Li; Guiyuan Li; Wei Xiong; Zhaoyang Zeng
Journal:  J Cancer       Date:  2019-06-24       Impact factor: 4.207

10.  The BRAF V600E mutation is a predictor of the effect of radioiodine therapy in papillary thyroid cancer.

Authors:  Junshang Ge; Jie Wang; Hui Wang; Xianjie Jiang; Qianjin Liao; Qian Gong; Yongzhen Mo; Xiaoling Li; Guiyuan Li; Wei Xiong; Jin Zhao; Zhaoyang Zeng
Journal:  J Cancer       Date:  2020-01-01       Impact factor: 4.207

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  22 in total

Review 1.  Regulatory pathways and drugs associated with ferroptosis in tumors.

Authors:  Dan Wang; Le Tang; Yijie Zhang; Guili Ge; Xianjie Jiang; Yongzhen Mo; Pan Wu; Xiangying Deng; Lvyuan Li; Sicheng Zuo; Qijia Yan; Shanshan Zhang; Fuyan Wang; Lei Shi; Xiayu Li; Bo Xiang; Ming Zhou; Qianjin Liao; Can Guo; Zhaoyang Zeng; Wei Xiong; Zhaojian Gong
Journal:  Cell Death Dis       Date:  2022-06-10       Impact factor: 9.685

2.  Single-cell RNA-seq identification of four differentially expressed survival-related genes by a TARGET: Osteosarcoma database analysis.

Authors:  Mesalie Feleke; Wenyu Feng; Emel Rothzerg; Dezhi Song; Qingjun Wei; Sulev Kõks; David Wood; Yun Liu; Jiake Xu
Journal:  Exp Biol Med (Maywood)       Date:  2022-03-12

Review 3.  A technology of a different sort: microraft arrays.

Authors:  Belén Cortés-Llanos; Yuli Wang; Christopher E Sims; Nancy L Allbritton
Journal:  Lab Chip       Date:  2021-08-04       Impact factor: 7.517

4.  What are the applications of single-cell RNA sequencing in cancer research: a systematic review.

Authors:  Lvyuan Li; Fang Xiong; Yumin Wang; Shanshan Zhang; Zhaojian Gong; Xiayu Li; Yi He; Lei Shi; Fuyan Wang; Qianjin Liao; Bo Xiang; Ming Zhou; Xiaoling Li; Yong Li; Guiyuan Li; Zhaoyang Zeng; Wei Xiong; Can Guo
Journal:  J Exp Clin Cancer Res       Date:  2021-05-11

5.  CancerSCEM: a database of single-cell expression map across various human cancers.

Authors:  Jingyao Zeng; Yadong Zhang; Yunfei Shang; Jialin Mai; Shuo Shi; Mingming Lu; Congfan Bu; Zhewen Zhang; Zaichao Zhang; Yang Li; Zhenglin Du; Jingfa Xiao
Journal:  Nucleic Acids Res       Date:  2022-01-07       Impact factor: 16.971

6.  Single-cell transcriptomic analysis reveals the critical molecular pattern of UV-induced cutaneous squamous cell carcinoma.

Authors:  Guorong Yan; Liang Li; Sibo Zhu; Yuhao Wu; Yeqiang Liu; Lude Zhu; Zijun Zhao; Fei Wu; Ning Jia; Caihe Liao; Long Jiang; Qingyu Zeng; Peiru Wang; Lei Shi; Zhe Zheng; Shan Fang; Guolong Zhang; Yichen Tang; Xiuli Wang
Journal:  Cell Death Dis       Date:  2021-12-21       Impact factor: 8.469

Review 7.  Machine learning for multi-omics data integration in cancer.

Authors:  Zhaoxiang Cai; Rebecca C Poulos; Jia Liu; Qing Zhong
Journal:  iScience       Date:  2022-01-22

Review 8.  Single-Cell RNA Sequencing in Lung Cancer: Revealing Phenotype Shaping of Stromal Cells in the Microenvironment.

Authors:  Jianhong Zhang; Chengyang Song; Ye Tian; Xueying Yang
Journal:  Front Immunol       Date:  2022-01-19       Impact factor: 7.561

Review 9.  Macrophage Related Chronic Inflammation in Non-Healing Wounds.

Authors:  Meirong Li; Qian Hou; Lingzhi Zhong; Yali Zhao; Xiaobing Fu
Journal:  Front Immunol       Date:  2021-06-16       Impact factor: 7.561

10.  Traditional chinese medicine syndromes classification associates with tumor cell and microenvironment heterogeneity in colorectal cancer: a single cell RNA sequencing analysis.

Authors:  Yiyu Lu; Chungen Zhou; Meidong Zhu; Zhiliang Fu; Yong Shi; Min Li; Wenhai Wang; Shibo Zhu; Bin Jiang; Yunquan Luo; Shibing Su
Journal:  Chin Med       Date:  2021-12-07       Impact factor: 5.455

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