Literature DB >> 33647037

BC-store: A program for MGISEQ barcode sets analysis.

Irina Bulusheva1, Vera Belova1, Boris Nikashin1, Dmitriy Korostin1.   

Abstract

Here we present the devised BC-store-a program for analyzing and selecting sets of barcodes for sequencing on platforms manufactured by MGI Tech (China). The app is available as an open source in Python3 and as a desktop version. The application allows analyzing the compatibility of barcodes on a single lane of a flow cell in a set in the case of equal and arbitrary fractions. In addition, with the help of this tool barcodes can be added to an existing set with custom share options. In this paper we describe how BC-store works for different tasks and consider the effectiveness of using BC-store in sequence lab routine tasks.

Entities:  

Year:  2021        PMID: 33647037      PMCID: PMC7920359          DOI: 10.1371/journal.pone.0247532

Source DB:  PubMed          Journal:  PLoS One        ISSN: 1932-6203            Impact factor:   3.240


  2 in total

Review 1.  Library construction for next-generation sequencing: overviews and challenges.

Authors:  Steven R Head; H Kiyomi Komori; Sarah A LaMere; Thomas Whisenant; Filip Van Nieuwerburgh; Daniel R Salomon; Phillip Ordoukhanian
Journal:  Biotechniques       Date:  2014-02-01       Impact factor: 1.993

2.  A reference human genome dataset of the BGISEQ-500 sequencer.

Authors:  Jie Huang; Xinming Liang; Yuankai Xuan; Chunyu Geng; Yuxiang Li; Haorong Lu; Shoufang Qu; Xianglin Mei; Hongbo Chen; Ting Yu; Nan Sun; Junhua Rao; Jiahao Wang; Wenwei Zhang; Ying Chen; Sha Liao; Hui Jiang; Xin Liu; Zhaopeng Yang; Feng Mu; Shangxian Gao
Journal:  Gigascience       Date:  2017-05-01       Impact factor: 6.524

  2 in total
  1 in total

1.  System analysis of the sequencing quality of human whole exome samples on BGI NGS platform.

Authors:  Vera Belova; Anna Pavlova; Robert Afasizhev; Viktoriya Moskalenko; Margarita Korzhanova; Andrey Krivoy; Valery Cheranev; Boris Nikashin; Irina Bulusheva; Denis Rebrikov; Dmitriy Korostin
Journal:  Sci Rep       Date:  2022-01-12       Impact factor: 4.379

  1 in total

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