Literature DB >> 33647016

Interspecies chimeric conditions affect the developmental rate of human pluripotent stem cells.

Jared Brown1, Christopher Barry2, Matthew T Schmitz2, Cara Argus2, Jennifer M Bolin2, Michael P Schwartz3, Amy Van Aartsen2, John Steill2, Scott Swanson2, Ron Stewart2, James A Thomson2,4,5, Christina Kendziorski6.   

Abstract

Human pluripotent stem cells hold significant promise for regenerative medicine. However, long differentiation protocols and immature characteristics of stem cell-derived cell types remain challenges to the development of many therapeutic applications. In contrast to the slow differentiation of human stem cells in vitro that mirrors a nine-month gestation period, mouse stem cells develop according to a much faster three-week gestation timeline. Here, we tested if co-differentiation with mouse pluripotent stem cells could accelerate the differentiation speed of human embryonic stem cells. Following a six-week RNA-sequencing time course of neural differentiation, we identified 929 human genes that were upregulated earlier and 535 genes that exhibited earlier peaked expression profiles in chimeric cell cultures than in human cell cultures alone. Genes with accelerated upregulation were significantly enriched in Gene Ontology terms associated with neurogenesis, neuron differentiation and maturation, and synapse signaling. Moreover, chimeric mixed samples correlated with in utero human embryonic samples earlier than human cells alone, and acceleration was dose-dependent on human-mouse co-culture ratios. The altered gene expression patterns and developmental rates described in this report have implications for accelerating human stem cell differentiation and the use of interspecies chimeric embryos in developing human organs for transplantation.

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Year:  2021        PMID: 33647016      PMCID: PMC7951976          DOI: 10.1371/journal.pcbi.1008778

Source DB:  PubMed          Journal:  PLoS Comput Biol        ISSN: 1553-734X            Impact factor:   4.475


  89 in total

1.  The timing of cortical neurogenesis is encoded within lineages of individual progenitor cells.

Authors:  Qin Shen; Yue Wang; John T Dimos; Christopher A Fasano; Timothy N Phoenix; Ihor R Lemischka; Natalia B Ivanova; Stefano Stifani; Edward E Morrisey; Sally Temple
Journal:  Nat Neurosci       Date:  2006-05-07       Impact factor: 24.884

2.  Conserved and divergent roles of FGF signaling in mouse epiblast stem cells and human embryonic stem cells.

Authors:  Boris Greber; Guangming Wu; Christof Bernemann; Jin Young Joo; Dong Wook Han; Kinarm Ko; Natalia Tapia; Davood Sabour; Jared Sterneckert; Paul Tesar; Hans R Schöler
Journal:  Cell Stem Cell       Date:  2010-03-05       Impact factor: 24.633

3.  Cooperation of BMP7 and SHH in the induction of forebrain ventral midline cells by prechordal mesoderm.

Authors:  J K Dale; C Vesque; T J Lints; T K Sampath; A Furley; J Dodd; M Placzek
Journal:  Cell       Date:  1997-07-25       Impact factor: 41.582

4.  Organoid single-cell genomic atlas uncovers human-specific features of brain development.

Authors:  Sabina Kanton; Michael James Boyle; Zhisong He; Malgorzata Santel; Anne Weigert; Fátima Sanchís-Calleja; Patricia Guijarro; Leila Sidow; Jonas Simon Fleck; Dingding Han; Zhengzong Qian; Michael Heide; Wieland B Huttner; Philipp Khaitovich; Svante Pääbo; Barbara Treutlein; J Gray Camp
Journal:  Nature       Date:  2019-10-16       Impact factor: 49.962

5.  Complementing tissue characterization by integrating transcriptome profiling from the Human Protein Atlas and from the FANTOM5 consortium.

Authors:  Nancy Yiu-Lin Yu; Björn M Hallström; Linn Fagerberg; Fredrik Ponten; Hideya Kawaji; Piero Carninci; Alistair R R Forrest; Yoshihide Hayashizaki; Mathias Uhlén; Carsten O Daub
Journal:  Nucleic Acids Res       Date:  2015-06-27       Impact factor: 16.971

6.  Enriching the gene set analysis of genome-wide data by incorporating directionality of gene expression and combining statistical hypotheses and methods.

Authors:  Leif Väremo; Jens Nielsen; Intawat Nookaew
Journal:  Nucleic Acids Res       Date:  2013-02-26       Impact factor: 16.971

7.  Allen Brain Atlas: an integrated spatio-temporal portal for exploring the central nervous system.

Authors:  Susan M Sunkin; Lydia Ng; Chris Lau; Tim Dolbeare; Terri L Gilbert; Carol L Thompson; Michael Hawrylycz; Chinh Dang
Journal:  Nucleic Acids Res       Date:  2012-11-28       Impact factor: 16.971

8.  A simple tool to improve pluripotent stem cell differentiation.

Authors:  Sundari Chetty; Felicia Walton Pagliuca; Christian Honore; Anastasie Kweudjeu; Alireza Rezania; Douglas A Melton
Journal:  Nat Methods       Date:  2013-04-14       Impact factor: 28.547

9.  Pooling across cells to normalize single-cell RNA sequencing data with many zero counts.

Authors:  Aaron T L Lun; Karsten Bach; John C Marioni
Journal:  Genome Biol       Date:  2016-04-27       Impact factor: 13.583

10.  Whole-genome sequencing of the blue whale and other rorquals finds signatures for introgressive gene flow.

Authors:  Úlfur Árnason; Fritjof Lammers; Vikas Kumar; Maria A Nilsson; Axel Janke
Journal:  Sci Adv       Date:  2018-04-04       Impact factor: 14.136

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  3 in total

Review 1.  Running the full human developmental clock in interspecies chimeras using alternative human stem cells with expanded embryonic potential.

Authors:  Justin Thomas; Ludovic Zimmerlin; Jeffrey S Huo; Michael Considine; Leslie Cope; Elias T Zambidis
Journal:  NPJ Regen Med       Date:  2021-05-17

2.  Human spinal cord in vitro differentiation pace is initially maintained in heterologous embryonic environments.

Authors:  Alwyn Dady; Lindsay Davidson; Pamela A Halley; Kate G Storey
Journal:  Elife       Date:  2022-02-21       Impact factor: 8.140

Review 3.  Cross-species comparisons and in vitro models to study tempo in development and homeostasis.

Authors:  Teresa Rayon; James Briscoe
Journal:  Interface Focus       Date:  2021-04-16       Impact factor: 3.906

  3 in total

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