Literature DB >> 33644388

The complete mitochondrial genome of the far Eastern myotis: Myotis bombinus Thomas, 1906 in mainland of Korea (Chiroptera, Vespertilionidae).

Byeori Kim1, Yoonhyuk Bae2,3, Jungmo Lee2,3, Jongsun Park2,3, Yu-Seong Choi4, Heungjin Ryu5, Sun-Sook Kim1.   

Abstract

We have determined the second mitochondrial genome of Myotis bombinus Thomas, 1906 in mainland of Korea. The circular mitogenome of M. bombinus is 17,035 bp long which is slightly shorter than that of the previous mitogenome of M. bombinus. It includes 13 protein-coding genes (PCGs), two ribosomal RNA genes, and 22 transfer RNAs. The base composition was AT-biased (66.1%). Fifty single nucleotide polymorphisms and 14 insertions were identified between two mitogenomes of M. bombinus. Phylogenetic trees show that both M. bominus mitogenomes are clustered in one clade.
© 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.

Entities:  

Keywords:  Chiroptera; Mitochondrial genome; Myotis bombinus; South Korea; Vespertilionidae

Year:  2021        PMID: 33644388      PMCID: PMC7894445          DOI: 10.1080/23802359.2021.1875911

Source DB:  PubMed          Journal:  Mitochondrial DNA B Resour        ISSN: 2380-2359            Impact factor:   0.658


  10 in total

1.  MRBAYES: Bayesian inference of phylogenetic trees.

Authors:  J P Huelsenbeck; F Ronquist
Journal:  Bioinformatics       Date:  2001-08       Impact factor: 6.937

2.  Complete mitochondrial genome of the far eastern Myotis, Myotis bombinus (Chiroptera, Vespertilionidae).

Authors:  Yoo-Kyung Kim; Su-Gon Park; Tae-Wook Kim; Jun-Ho Park; Pradeep Adhikari; Garam Kim; Seon-Mi Park; Jun-Won Lee; Dae-Ju Oh; Sang-Hyun Han; Hong-Shik Oh
Journal:  Mitochondrial DNA A DNA Mapp Seq Anal       Date:  2015-12-29       Impact factor: 1.514

3.  Velvet: algorithms for de novo short read assembly using de Bruijn graphs.

Authors:  Daniel R Zerbino; Ewan Birney
Journal:  Genome Res       Date:  2008-03-18       Impact factor: 9.043

Review 4.  Mammals of Korea: a review of their taxonomy, distribution and conservation status.

Authors:  Yeong-Seok Jo; John T Baccus; John L Koprowski
Journal:  Zootaxa       Date:  2018-11-18       Impact factor: 1.091

5.  MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms.

Authors:  Sudhir Kumar; Glen Stecher; Michael Li; Christina Knyaz; Koichiro Tamura
Journal:  Mol Biol Evol       Date:  2018-06-01       Impact factor: 16.240

6.  MAFFT multiple sequence alignment software version 7: improvements in performance and usability.

Authors:  Kazutaka Katoh; Daron M Standley
Journal:  Mol Biol Evol       Date:  2013-01-16       Impact factor: 16.240

7.  The Sequence Alignment/Map format and SAMtools.

Authors:  Heng Li; Bob Handsaker; Alec Wysoker; Tim Fennell; Jue Ruan; Nils Homer; Gabor Marth; Goncalo Abecasis; Richard Durbin
Journal:  Bioinformatics       Date:  2009-06-08       Impact factor: 6.937

8.  Complete sequences of eastern water bat, Myotis petax (Chiroptera; Microchiroptera; Vespertilionidae) mitogenome.

Authors:  Jae Yeon Hwang; Gwi-Deuk Jin; Jongbin Park; Sang-Goo Lee; Eun Bae Kim
Journal:  Mitochondrial DNA A DNA Mapp Seq Anal       Date:  2015-09-02       Impact factor: 1.514

9.  Optimizing de novo transcriptome assembly from short-read RNA-Seq data: a comparative study.

Authors:  Qiong-Yi Zhao; Yi Wang; Yi-Meng Kong; Da Luo; Xuan Li; Pei Hao
Journal:  BMC Bioinformatics       Date:  2011-12-14       Impact factor: 3.169

10.  Trimmomatic: a flexible trimmer for Illumina sequence data.

Authors:  Anthony M Bolger; Marc Lohse; Bjoern Usadel
Journal:  Bioinformatics       Date:  2014-04-01       Impact factor: 6.937

  10 in total

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