Literature DB >> 33644075

Single-Cell Sequencing Applications in the Inner Ear.

Mingxuan Wu1, Mingyu Xia1, Wenyan Li1, Huawei Li1,2,3,4.   

Abstract

Genomics studies face specific challenges in the inner ear due to the multiple types and limited amounts of inner ear cells that are arranged in a very delicate structure. However, advances in single-cell sequencing (SCS) technology have made it possible to analyze gene expression variations across different cell types as well as within specific cell groups that were previously considered to be homogeneous. In this review, we summarize recent advances in inner ear research brought about by the use of SCS that have delineated tissue heterogeneity, identified unknown cell subtypes, discovered novel cell markers, and revealed dynamic signaling pathways during development. SCS opens up new avenues for inner ear research, and the potential of the technology is only beginning to be explored.
Copyright © 2021 Wu, Xia, Li and Li.

Entities:  

Keywords:  hair cell; inner ear; single cell sequencing; spiral ganglion neuron; supporting cell

Year:  2021        PMID: 33644075      PMCID: PMC7907461          DOI: 10.3389/fcell.2021.637779

Source DB:  PubMed          Journal:  Front Cell Dev Biol        ISSN: 2296-634X


  138 in total

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Authors:  Melissa M McGovern; Michelle R Randle; Candice L Cuppini; Kaley A Graves; Brandon C Cox
Journal:  Development       Date:  2019-02-15       Impact factor: 6.868

2.  Utilizing ethnic-specific differences in minor allele frequency to recategorize reported pathogenic deafness variants.

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Journal:  Am J Hum Genet       Date:  2014-09-25       Impact factor: 11.025

3.  The mutation-free embryo for in vitro fertilization selected by MALBAC-PGD resulted in a healthy live birth from a family carrying PKD 1 mutation.

Authors:  Wen Li; Yiyi Ma; Shengqiang Yu; Ningxia Sun; Liang Wang; Dongping Chen; Guijiang Yang; Sijia Lu; Yangyang Li; Bo Yang; Changlin Mei
Journal:  J Assist Reprod Genet       Date:  2017-08-19       Impact factor: 3.412

4.  Bisulfite-independent analysis of CpG island methylation enables genome-scale stratification of single cells.

Authors:  Lin Han; Hua-Jun Wu; Haiying Zhu; Kun-Yong Kim; Sadie L Marjani; Markus Riester; Ghia Euskirchen; Xiaoyuan Zi; Jennifer Yang; Jasper Han; Michael Snyder; In-Hyun Park; Rafael Irizarry; Sherman M Weissman; Franziska Michor; Rong Fan; Xinghua Pan
Journal:  Nucleic Acids Res       Date:  2017-06-02       Impact factor: 16.971

5.  Tracing the derivation of embryonic stem cells from the inner cell mass by single-cell RNA-Seq analysis.

Authors:  Fuchou Tang; Catalin Barbacioru; Siqin Bao; Caroline Lee; Ellen Nordman; Xiaohui Wang; Kaiqin Lao; M Azim Surani
Journal:  Cell Stem Cell       Date:  2010-05-07       Impact factor: 24.633

6.  Candidate phylum TM6 genome recovered from a hospital sink biofilm provides genomic insights into this uncultivated phylum.

Authors:  Jeffrey S McLean; Mary-Jane Lombardo; Jonathan H Badger; Anna Edlund; Mark Novotny; Joyclyn Yee-Greenbaum; Nikolay Vyahhi; Adam P Hall; Youngik Yang; Christopher L Dupont; Michael G Ziegler; Hamidreza Chitsaz; Andrew E Allen; Shibu Yooseph; Glenn Tesler; Pavel A Pevzner; Robert M Friedman; Kenneth H Nealson; J Craig Venter; Roger S Lasken
Journal:  Proc Natl Acad Sci U S A       Date:  2013-06-10       Impact factor: 11.205

7.  Regeneration of sensory hair cells after acoustic trauma.

Authors:  J T Corwin; D A Cotanche
Journal:  Science       Date:  1988-06-24       Impact factor: 47.728

8.  Highly multiplexed and strand-specific single-cell RNA 5' end sequencing.

Authors:  Saiful Islam; Una Kjällquist; Annalena Moliner; Pawel Zajac; Jian-Bing Fan; Peter Lönnerberg; Sten Linnarsson
Journal:  Nat Protoc       Date:  2012-04-05       Impact factor: 13.491

9.  Single-cell chromatin accessibility reveals principles of regulatory variation.

Authors:  Jason D Buenrostro; Beijing Wu; Ulrike M Litzenburger; Dave Ruff; Michael L Gonzales; Michael P Snyder; Howard Y Chang; William J Greenleaf
Journal:  Nature       Date:  2015-06-17       Impact factor: 49.962

10.  Laser capture microscopy coupled with Smart-seq2 for precise spatial transcriptomic profiling.

Authors:  Susanne Nichterwitz; Geng Chen; Julio Aguila Benitez; Marlene Yilmaz; Helena Storvall; Ming Cao; Rickard Sandberg; Qiaolin Deng; Eva Hedlund
Journal:  Nat Commun       Date:  2016-07-08       Impact factor: 14.919

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  2 in total

1.  Reactivation of the Neurogenic Niche in the Adult Zebrafish Statoacoustic Ganglion Following a Mechanical Lesion.

Authors:  Simone Schwarzer; Devavrat Ravindra Rekhade; Anja Machate; Sandra Spieß; Michaela Geffarth; Diana Ezhkova; Stefan Hans
Journal:  Front Cell Dev Biol       Date:  2022-03-15

Review 2.  Vestibular Deficits in Deafness: Clinical Presentation, Animal Modeling, and Treatment Solutions.

Authors:  Audrey Maudoux; Sandrine Vitry; Aziz El-Amraoui
Journal:  Front Neurol       Date:  2022-04-04       Impact factor: 4.003

  2 in total

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