Literature DB >> 33643716

Biomarker identification of isolated compartments of the cell wall, cytoplasm and vacuole from the internodal cell of characean Nitellopsis obtusa.

Brigita Gylytė1, Levonas Manusadžianas1, Sigita Jurkonienė1, Reda Cimmperman1, Vaidevutis Šveikauskas1.   

Abstract

Cells of characean algae are attractive for plant cell physiologists because of their large size and their close relation to higher plant cells. The objective of our study was to evaluate the purity of the compartments (cell wall, cytoplasm with plastids, mitochondria, nuclei and endomembrane system, and vacuole) separated mechanically from the internodal cells of Nitellopsis obtusa using enzymatic markers. These included α-mannosidase and malate dehydrogenase, vacuolar and cytoplasmic enzymes, respectively. The biomarkers applied revealed the degree of compartment contamination with the material from unwanted cell parts. The cell wall was contaminated slightly by vacuole and cytoplasm residuals, respectively by 12.3 and 1.96% of corresponding biomarker activities. Relatively high activity of vacuolar marker in the cell wall could be associated with the cell vacuoles in the multicellular structure of the nodes. The biomarkers confirmed highly purified vacuolar (99.5%) and cytoplasmic (86.7%) compartments. Purity estimation of the cell fractions enabled reevaluating nCuO related Cu concentrations in the compartments of charophyte cell. The internalisation of CuO nanoparticles in N. obtusa cell occurred already after 0.5h. In general, the approach seems to be useful for assessing the accumulation and distribution of various xenobiotics and/or metabolites within plant cell. All this justifies N.obtusa internodal cells as a model organism for modern studies in cell biology and nanotoxicology. ©2021 Gylytė et al.

Entities:  

Keywords:  Biomarkers; Cell compartments; Cell wall; CuO nanoparticles; Cytoplasm; Nitellopsis obtusa; Vacuole

Year:  2021        PMID: 33643716      PMCID: PMC7896509          DOI: 10.7717/peerj.10930

Source DB:  PubMed          Journal:  PeerJ        ISSN: 2167-8359            Impact factor:   2.984


  29 in total

1.  Purification and characterization of a co(II)-sensitive alpha-mannosidase from Ginkgo biloba seeds.

Authors:  Kwan Kit Woo; Mitsuhiro Miyazaki; Shintaro Hara; Mariko Kimura; Yoshinobu Kimura
Journal:  Biosci Biotechnol Biochem       Date:  2004-12       Impact factor: 2.043

2.  Metabolomics of a single vacuole reveals metabolic dynamism in an alga Chara australis.

Authors:  Akira Oikawa; Fumio Matsuda; Munehiro Kikuyama; Tetsuro Mimura; Kazuki Saito
Journal:  Plant Physiol       Date:  2011-08-16       Impact factor: 8.340

3.  A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding.

Authors:  M M Bradford
Journal:  Anal Biochem       Date:  1976-05-07       Impact factor: 3.365

4.  Molecular Components of Arabidopsis Intact Vacuoles Clarified with Metabolomic and Proteomic Analyses.

Authors:  Miwa Ohnishi; Aya Anegawa; Yuko Sugiyama; Kazuo Harada; Akira Oikawa; Yasumune Nakayama; Fumio Matsuda; Yukiko Nakamura; Ryosuke Sasaki; Chizuko Shichijo; Patrick G Hatcher; Hidehiro Fukaki; Shigehiko Kanaya; Koh Aoki; Mami Yamazaki; Eiichiro Fukusaki; Kazuki Saito; Tetsuro Mimura
Journal:  Plant Cell Physiol       Date:  2018-07-01       Impact factor: 4.927

5.  The N-glycans of jack bean alpha-mannosidase. Structure, topology and function.

Authors:  Y Kimura; D Hess; A Sturm
Journal:  Eur J Biochem       Date:  1999-08

Review 6.  Malate dehydrogenase isoenzymes: cellular locations and role in the flow of metabolites between the cytoplasm and cell organelles.

Authors:  C Gietl
Journal:  Biochim Biophys Acta       Date:  1992-06-19

7.  Duplicated cytosolic malate dehydrogenase genes in Zea mays.

Authors:  D E McMillin; J G Scandalios
Journal:  Proc Natl Acad Sci U S A       Date:  1980-08       Impact factor: 11.205

8.  Traffic of human α-mannosidase in plant cells suggests the presence of a new endoplasmic reticulum-to-vacuole pathway without involving the Golgi complex.

Authors:  Francesca De Marchis; Michele Bellucci; Andrea Pompa
Journal:  Plant Physiol       Date:  2013-02-28       Impact factor: 8.340

9.  Dissecting the subcellular membrane proteome reveals enrichment of H+ (co-)transporters and vesicle trafficking proteins in acidic zones of Chara internodal cells.

Authors:  Heidi Pertl-Obermeyer; Peter Lackner; Waltraud X Schulze; Marion C Hoepflinger; Margit Hoeftberger; Ilse Foissner; Gerhard Obermeyer
Journal:  PLoS One       Date:  2018-08-29       Impact factor: 3.240

Review 10.  A Review of Plant Vacuoles: Formation, Located Proteins, and Functions.

Authors:  Xiaona Tan; Kaixia Li; Zheng Wang; Keming Zhu; Xiaoli Tan; Jun Cao
Journal:  Plants (Basel)       Date:  2019-09-05
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