| Literature DB >> 33642890 |
Klaus Hackner1,2, Anna Buder3, Maximilian J Hochmair4, Matthaeus Strieder1, Christina Grech3, Hannah Fabikan4, Otto C Burghuber5, Peter Errhalt1, Martin Filipits3.
Abstract
BACKGROUND: Proof of the T790M resistance mutation is mandatory if patients with EGFR-mutated non-small cell lung cancer (NSCLC) progress under first- or second-generation tyrosine kinase inhibitor therapy. In addition to rebiopsy, analysis of plasma circulating tumor DNA is used to detect T790M resistance mutation. We studied whether sputum is another feasible specimen for detection of EGFR mutations.Entities:
Keywords: EGFR; NSCLC; Sputum; T790M; ddPCR
Year: 2021 PMID: 33642890 PMCID: PMC7894584 DOI: 10.1177/1179554921993072
Source DB: PubMed Journal: Clin Med Insights Oncol ISSN: 1179-5549
Calculation of concordance rate, positive percent agreement, and negative percent agreement.
| Plasma | Total | ||
|---|---|---|---|
| Negative | Positive | ||
| Sputum | |||
| Negative | a | b[ | a + b |
| Positive | c[ | d[ | c + d |
| Total | a + c | b + d | N |
a the number of plasma negative, sputum negative.
b the number of plasma positive, sputum negative.
c the number of plasma negative, sputum positive.
d the number of plasma positive, sputum positive.
Concordance rate = 100% × (a + d) / (a + b + c + d).
Sensitivity (positive percent agreement) = 100% × d / (b + d).
Specificity (negative percent agreement) = 100% × a / (a + c).
Baseline characteristics of the study population.
| No. of patients, n | 28 |
|---|---|
| Age, median (range) | 66 (51-83) |
| <65 years, n (%) | 13 (46.4) |
| ⩾65 years, n (%) | 15 (53.6) |
| Smoking status | |
| Nonsmoker, n (%) | 21 (75) |
| Former smoker, n (%) | 7 (25) |
| Sex | |
| Female, n (%) | 24 (85.7) |
| Male, n (%) | 4 (14.3) |
| Histology: adenocarcinoma, n (%) | 28 (100) |
| Stage | |
| I or II (limited), n (%) | 4 (14.3) |
| III or IV (advanced), n (%) | 24 (85.7) |
| Exon 19 deletion, n (%) | 19 (68) |
| 21-L858R, n (%) | 9 (32) |
| No. of included sputum/plasma samples, n | 31 |
| Clinical assessment at sample collection | |
| Stable disease, n (%) | 17 (54.8) |
| Progressive disease, n (%) | 14 (45.2) |
| Afatinib, n (%) | 20 (64.5) |
| Erlotinib, n (%) | 0 (0.0) |
| Gefitinib, n (%) | 5 (16.1) |
| Osimertinib, n (%) | 2 (6.5) |
| Treatment naïve, n (%) | 4 (12.9) |
| Quantity of sputum samples in milliliters, mean (SD) | 2.93 (0.81) |
| Positive bronchus sign at inclusion, n (%) | 25 (80.6) |
Abbreviation: TKI, tyrosine kinase inhibitor.
Details of EGFR mutation analysis in plasma and sputum using ddPCR.
| Pat no. | Age | Smoking status (pack-years) | Site of progression | Stable disease | Progressive disease | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Initial | Initial | T790M | Rebiopsy T790M | ||||||||
| Plasma | Sputum | Plasma | Sputum | Plasma | Sputum | Result | |||||
| 1 | 75 | Ex (30) | Del19 | – | 3.09 | ||||||
| 2 | 75 | Never | L858R | – | – | ||||||
| 3 | 58 | Never | Del19 | 91.55 | 26.33 | ||||||
| 4 | 63 | Never | Del19 | – | – | ||||||
| 5 | 79 | Never | Del19 | – | 68.57 | ||||||
| 6 | 83 | Never | Del19 | 13.17 | 27.11 | ||||||
| 7 | 78 | Never | L858R | 1.45 | – | ||||||
| 8 | 56 | Ex (10) | Del19 | – | – | ||||||
| 9 | 67 | Ex (15) | Del19 | – | 10.28 | ||||||
| 10 | 72 | Never | Del19 | 57.16 | – | ||||||
| 11 | 82 | Never | Del19 | – | – | ||||||
| 12 | 67 | Never | L858R | 128.33 | 443.37 | ||||||
| 13 | 63 | Never | L858R | 22.11 | 503.08 | ||||||
| 14 | 77 | Never | Del19 | 4.91 | – | ||||||
| 15 | 51 | Never | Lung, liver | Del19 | – | – | 84.0 | – | 21.21 | 36.25 | |
| 16 | 61 | Ex (5) | Lung, pleura | Del19 | 4.02 | – | 24.56 | – | – | – | n.p. |
| 17 | 66 | Never | Pleura | Del19 | – | – | 25.45 | – | – | – | Negative |
| 18 | 56 | Never | Bone | L858R | – | 28.67 | – | – | n.p. | ||
| 19 | 65 | Never | Lung, lymph node | Del19 | – | 12.67 | – | – | Negative | ||
| 20 | 78 | Ex (5) | Lung | Del19 | – | – | – | – | Negative | ||
| 21 | 64 | Ex (15) | Brain | Del19 | – | 5.41 | – | 15.57 | |||
| 22 | 73 | Never | Lung, lymph node | L858R | 2888.0 | 3818.18 | 3.88 | 59.40 | |||
| 23 | 80 | Never | Lung, bone | L858R | 20.45 | 125.0 | 2.40 | 20.45 | |||
| 24 | 62 | Never | Liver, brain | L858R | – | – | – | – | Negative | ||
| 25 | 61 | Never | Brain, lung | Del19 | – | 16.30 | – | 222.22 | |||
| 26 | 62 | Never | Lung | Del19 | 7984.70 | 660.0 | 2438.30 | 656.67 | |||
| 27 | 58 | Never | Lung, liver | Del19 | 165.23 | 2489.96 | – | – | Negative | ||
| 28 | 70 | Ex (50) | Lung, bone | L858R | 15 608.0 | 306.51 | – | – | n.p. | ||
Abbreviations: ddPCR, droplet digital polymerase chain reaction; n.p., not performed.
Pat nos. 17 to 19 were included twice (at time of stable and progressive disease), they are, therefore, shaded.
Contingency tables comparing test results of ddPCR for plasma and sputum.
| Plasma | Total | |||
|---|---|---|---|---|
| Negative | Positive | |||
| (a) T790M | ||||
| Sputum | ||||
| Negative | 8 (57%) | 0 | 8 (57%) | Concordance rate 0.86 |
| Positive | 2 (14%) | 4 (29%) | 6 (43%) | Sensitivity 1.0 |
| Total | 10 (71%) | 4 (29%) | 14 (100%) | Specificity 0.80 |
| (b) Exon 19 del | ||||
| Sputum | ||||
| Negative | 6 (27%) | 7 (32%) | 13 (59%) | Concordance rate 0.45 |
| Positive | 5 (23%) | 4 (18%) | 9 (41%) | Sensitivity 0.36 |
| Total | 11 (50%) | 11 (50%) | 22 (100%) | Specificity 0.55 |
| (c) L858R | ||||
| Sputum | ||||
| Negative | 2 (22%) | 0 | 2 (22%) | Concordance rate 0.78 |
| Positive | 2 (22%) | 5 (56%) | 7 (78%) | Sensitivity 1.0 |
| Total | 4 (44%) | 5 (56%) | 9 (100%) | Specificity 0.5 |
Abbreviation: ddPCR, droplet digital polymerase chain reaction.
Figure 1.Percentage of detection rate for plasma and sputum analysis by ddPCR and combination of both specimen for EGFR L858R, exon 19 deletions, and T790M.
ddPCR indicates droplet digital polymerase chain reaction.