Literature DB >> 33639836

Transcriptome dynamics in early in vivo developing and in vitro produced porcine embryos.

Vera A van der Weijden1, Meret Schmidhauser1, Mayuko Kurome2, Johannes Knubben3, Veronika L Flöter1,3, Eckhard Wolf2, Susanne E Ulbrich4.   

Abstract

BACKGROUND: The transcriptional changes around the time of embryonic genome activation in pre-implantation embryos indicate that this process is highly dynamic. In vitro produced porcine blastocysts are known to be less competent than in vivo developed blastocysts. To understand the conditions that compromise developmental competence of in vitro embryos, it is crucial to evaluate the transcriptional profile of porcine embryos during pre-implantation stages. In this study, we investigated the transcriptome dynamics in in vivo developed and in vitro produced 4-cell embryos, morulae and hatched blastocysts.
RESULTS: In vivo developed and in vitro produced embryos displayed largely similar transcriptome profiles during development. Enriched canonical pathways from the 4-cell to the morula transition that were shared between in vivo developed and in vitro produced embryos included oxidative phosphorylation and EIF2 signaling. The shared canonical pathways from the morula to the hatched blastocyst transition were 14-3-3-mediated signaling, xenobiotic metabolism general signaling pathway, and NRF2-mediated oxidative stress response. The in vivo developed and in vitro produced hatched blastocysts further were compared to identify molecular signaling pathways indicative of lower developmental competence of in vitro produced hatched blastocysts. A higher metabolic rate and expression of the arginine transporter SLC7A1 were found in in vitro produced hatched blastocysts.
CONCLUSIONS: Our findings suggest that embryos with compromised developmental potential are arrested at an early stage of development, while embryos developing to the hatched blastocyst stage display largely similar transcriptome profiles, irrespective of the embryo source. The hatched blastocysts derived from the in vitro fertilization-pipeline showed an enrichment in molecular signaling pathways associated with lower developmental competence, compared to the in vivo developed embryos.

Entities:  

Keywords:  Embryo development; In vivo embryo development; Porcine; Transcriptomics; in vitro fertilization

Mesh:

Year:  2021        PMID: 33639836      PMCID: PMC7913449          DOI: 10.1186/s12864-021-07430-7

Source DB:  PubMed          Journal:  BMC Genomics        ISSN: 1471-2164            Impact factor:   3.969


  51 in total

1.  Early aberrations in chromatin dynamics in embryos produced under in vitro conditions.

Authors:  Rahul S Deshmukh; Olga Østrup; Frantisek Strejcek; Morten Vejlsted; Andrea Lucas-Hahn; Bjorn Petersen; Juan Li; Henrik Callesen; Heiner Niemann; Poul Hyttel
Journal:  Cell Reprogram       Date:  2012-04-02       Impact factor: 1.987

2.  Effect of the removal of cumulus cells on the nuclear maturation, fertilization and development of porcine oocytes.

Authors:  P Wongsrikeao; Y Kaneshige; R Ooki; M Taniguchi; B Agung; M Nii; T Otoi
Journal:  Reprod Domest Anim       Date:  2005-04       Impact factor: 2.005

3.  Transcriptome fingerprint of bovine 2-cell stage blastomeres is directly correlated with the individual developmental competence of the corresponding sister blastomere.

Authors:  Eva Held; Dessie Salilew-Wondim; Matthias Linke; Ulrich Zechner; Franca Rings; Dawit Tesfaye; Karl Schellander; Michael Hoelker
Journal:  Biol Reprod       Date:  2012-12-27       Impact factor: 4.285

4.  HISAT: a fast spliced aligner with low memory requirements.

Authors:  Daehwan Kim; Ben Langmead; Steven L Salzberg
Journal:  Nat Methods       Date:  2015-03-09       Impact factor: 28.547

5.  Oxidative phosphorylation-dependent and -independent oxygen consumption by individual preimplantation mouse embryos.

Authors:  J R Trimarchi; L Liu; D M Porterfield; P J Smith; D L Keefe
Journal:  Biol Reprod       Date:  2000-06       Impact factor: 4.285

6.  Direct introduction of gene constructs into the pronucleus-like structure of cloned embryos: a new strategy for the generation of genetically modified pigs.

Authors:  Mayuko Kurome; Simon Leuchs; Barbara Kessler; Elisabeth Kemter; Eva-Maria Jemiller; Beatrix Foerster; Nikolai Klymiuk; Valeri Zakhartchenko; Eckhard Wolf
Journal:  Transgenic Res       Date:  2016-12-10       Impact factor: 2.788

7.  Pathway enrichment analysis and visualization of omics data using g:Profiler, GSEA, Cytoscape and EnrichmentMap.

Authors:  Jüri Reimand; Ruth Isserlin; Veronique Voisin; Mike Kucera; Christian Tannus-Lopes; Asha Rostamianfar; Lina Wadi; Mona Meyer; Jeff Wong; Changjiang Xu; Daniele Merico; Gary D Bader
Journal:  Nat Protoc       Date:  2019-02       Impact factor: 13.491

8.  Single-cell RNA sequencing reveals developmental heterogeneity of blastomeres during major genome activation in bovine embryos.

Authors:  Ilaria Lavagi; Stefan Krebs; Kilian Simmet; Andrea Beck; Valeri Zakhartchenko; Eckhard Wolf; Helmut Blum
Journal:  Sci Rep       Date:  2018-03-06       Impact factor: 4.379

9.  RNA profiles of porcine embryos during genome activation reveal complex metabolic switch sensitive to in vitro conditions.

Authors:  Olga Østrup; Gayla Olbricht; Esben Østrup; Poul Hyttel; Philippe Collas; Ryan Cabot
Journal:  PLoS One       Date:  2013-04-29       Impact factor: 3.240

10.  Multiple sources of bias confound functional enrichment analysis of global -omics data.

Authors:  James A Timmons; Krzysztof J Szkop; Iain J Gallagher
Journal:  Genome Biol       Date:  2015-09-07       Impact factor: 13.583

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  4 in total

1.  Cross-species meta-analysis of transcriptome changes during the morula-to-blastocyst transition: metabolic and physiological changes take center stage.

Authors:  Peter Z Schall; Keith E Latham
Journal:  Am J Physiol Cell Physiol       Date:  2021-10-20       Impact factor: 4.249

2.  Mitochondrial supplementation of Sus scrofa metaphase II oocytes alters DNA methylation and gene expression profiles of blastocysts.

Authors:  Takashi Okada; Stephen McIlfatrick; Nhi Hin; Nader Aryamanesh; James Breen; Justin C St John
Journal:  Epigenetics Chromatin       Date:  2022-04-15       Impact factor: 5.465

3.  Oviductal Extracellular Vesicles Enhance Porcine In Vitro Embryo Development by Modulating the Embryonic Transcriptome.

Authors:  Agostinho Soares de Alcântara-Neto; Cristina Cuello; Rustem Uzbekov; Stefan Bauersachs; Pascal Mermillod; Carmen Almiñana
Journal:  Biomolecules       Date:  2022-09-15

4.  ROCK Inhibitor (Y-27632) Abolishes the Negative Impacts of miR-155 in the Endometrium-Derived Extracellular Vesicles and Supports Embryo Attachment.

Authors:  Islam M Saadeldin; Bereket Molla Tanga; Seonggyu Bang; Chaerim Seo; Okjae Koo; Sung Ho Yun; Seung Il Kim; Sanghoon Lee; Jongki Cho
Journal:  Cells       Date:  2022-10-10       Impact factor: 7.666

  4 in total

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