Literature DB >> 33637780

A novel D-xylose isomerase from the gut of the wood feeding beetle Odontotaenius disjunctus efficiently expressed in Saccharomyces cerevisiae.

Paulo César Silva1, Javier A Ceja-Navarro2,3, Flávio Azevedo4, Ulas Karaoz5, Eoin L Brodie6,7, Björn Johansson8.   

Abstract

Carbohydrate rich substrates such as lignocellulosic hydrolysates remain one of the primary sources of potentially renewable fuel and bulk chemicals. The pentose sugar D-xylose is often present in significant amounts along with hexoses. Saccharomyces cerevisiae can acquire the ability to metabolize D-xylose through expression of heterologous D-xylose isomerase (XI). This enzyme is notoriously difficult to express in S. cerevisiae and only fourteen XIs have been reported to be active so far. We cloned a new D-xylose isomerase derived from microorganisms in the gut of the wood-feeding beetle Odontotaenius disjunctus. Although somewhat homologous to the XI from Piromyces sp. E2, the new gene was identified as bacterial in origin and the host as a Parabacteroides sp. Expression of the new XI in S. cerevisiae resulted in faster aerobic growth than the XI from Piromyces on D-xylose media. The D-xylose isomerization rate conferred by the new XI was also 72% higher, while absolute xylitol production was identical in both strains. Interestingly, increasing concentrations of xylitol (up to 8 g L-1) appeared not to inhibit D-xylose consumption. The newly described XI displayed 2.6 times higher specific activity, 37% lower KM for D-xylose, and exhibited higher activity over a broader temperature range, retaining 51% of maximal activity at 30 °C compared with only 29% activity for the Piromyces XI.

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Year:  2021        PMID: 33637780      PMCID: PMC7910561          DOI: 10.1038/s41598-021-83937-z

Source DB:  PubMed          Journal:  Sci Rep        ISSN: 2045-2322            Impact factor:   4.379


  56 in total

1.  Horizontal Gene Transfer as an Indispensable Driver for Evolution of Neocallimastigomycota into a Distinct Gut-Dwelling Fungal Lineage.

Authors:  Chelsea L Murphy; Noha H Youssef; Radwa A Hanafy; M B Couger; Jason E Stajich; Yan Wang; Kristina Baker; Sumit S Dagar; Gareth W Griffith; Ibrahim F Farag; T M Callaghan; Mostafa S Elshahed
Journal:  Appl Environ Microbiol       Date:  2019-07-18       Impact factor: 4.792

Review 2.  Lignocellulose: A sustainable material to produce value-added products with a zero waste approach-A review.

Authors:  Alejandra Arevalo-Gallegos; Zanib Ahmad; Muhammad Asgher; Roberto Parra-Saldivar; Hafiz M N Iqbal
Journal:  Int J Biol Macromol       Date:  2017-02-27       Impact factor: 6.953

3.  Functional expression of a bacterial xylose isomerase in Saccharomyces cerevisiae.

Authors:  Dawid Brat; Eckhard Boles; Beate Wiedemann
Journal:  Appl Environ Microbiol       Date:  2009-02-13       Impact factor: 4.792

Review 4.  Polysaccharide utilization by gut bacteria: potential for new insights from genomic analysis.

Authors:  Harry J Flint; Edward A Bayer; Marco T Rincon; Raphael Lamed; Bryan A White
Journal:  Nat Rev Microbiol       Date:  2008-02       Impact factor: 60.633

5.  Isolation of xylose isomerases by sequence- and function-based screening from a soil metagenomic library.

Authors:  Nádia Skorupa Parachin; Marie F Gorwa-Grauslund
Journal:  Biotechnol Biofuels       Date:  2011-05-05       Impact factor: 6.040

Review 6.  Xylose Fermentation by Saccharomyces cerevisiae: Challenges and Prospects.

Authors:  Danuza Nogueira Moysés; Viviane Castelo Branco Reis; João Ricardo Moreira de Almeida; Lidia Maria Pepe de Moraes; Fernando Araripe Gonçalves Torres
Journal:  Int J Mol Sci       Date:  2016-02-25       Impact factor: 5.923

7.  The EMBL-EBI search and sequence analysis tools APIs in 2019.

Authors:  Fábio Madeira; Young Mi Park; Joon Lee; Nicola Buso; Tamer Gur; Nandana Madhusoodanan; Prasad Basutkar; Adrian R N Tivey; Simon C Potter; Robert D Finn; Rodrigo Lopez
Journal:  Nucleic Acids Res       Date:  2019-07-02       Impact factor: 16.971

8.  QMEANDisCo-distance constraints applied on model quality estimation.

Authors:  Gabriel Studer; Christine Rempfer; Andrew M Waterhouse; Rafal Gumienny; Juergen Haas; Torsten Schwede
Journal:  Bioinformatics       Date:  2020-04-15       Impact factor: 6.937

9.  Comparison of the xylose reductase-xylitol dehydrogenase and the xylose isomerase pathways for xylose fermentation by recombinant Saccharomyces cerevisiae.

Authors:  Kaisa Karhumaa; Rosa Garcia Sanchez; Bärbel Hahn-Hägerdal; Marie-F Gorwa-Grauslund
Journal:  Microb Cell Fact       Date:  2007-02-05       Impact factor: 5.328

10.  Screening and evolution of a novel protist xylose isomerase from the termite Reticulitermes speratus for efficient xylose fermentation in Saccharomyces cerevisiae.

Authors:  Satoshi Katahira; Nobuhiko Muramoto; Shigeharu Moriya; Risa Nagura; Nobuki Tada; Noriko Yasutani; Moriya Ohkuma; Toru Onishi; Kenro Tokuhiro
Journal:  Biotechnol Biofuels       Date:  2017-08-23       Impact factor: 6.040

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