Literature DB >> 33633768

Functioning of PPR Proteins in Organelle RNA Metabolism and Chloroplast Biogenesis.

Xinwei Wang1,2, Yaqi An2, Pan Xu3, Jianwei Xiao1,2.   

Abstract

The pentatricopeptide repeat (PPR) proteins constitute one of the largest nuclear-encoded protein families in higher plants, with over 400 members in most sequenced plant species. The molecular functions of these proteins and their physiological roles during plant growth and development have been widely studied. Generally, there is mounting evidence that PPR proteins are involved in the post-transcriptional regulation of chloroplast and/or mitochondrial genes, including RNA maturation, editing, intron splicing, transcripts' stabilization, and translation initiation. The cooperative action of RNA metabolism has profound effects on the biogenesis and functioning of both chloroplasts and mitochondria and, consequently, on the photosynthesis, respiration, and development of plants and their environmental responses. In this review, we summarize the latest research on PPR proteins, specifically how they might function in the chloroplast, by documenting their mechanism of molecular function, their corresponding RNA targets, and their specific effects upon chloroplast biogenesis and host organisms.
Copyright © 2021 Wang, An, Xu and Xiao.

Entities:  

Keywords:  PPR protein; biogenesis; chloroplast; gene expression; metabolism

Year:  2021        PMID: 33633768      PMCID: PMC7900629          DOI: 10.3389/fpls.2021.627501

Source DB:  PubMed          Journal:  Front Plant Sci        ISSN: 1664-462X            Impact factor:   5.753


  90 in total

1.  PALE-GREEN LEAF12 Encodes a Novel Pentatricopeptide Repeat Protein Required for Chloroplast Development and 16S rRNA Processing in Rice.

Authors:  Long Chen; Lichao Huang; Liping Dai; Yihong Gao; Weiwei Zou; Xueli Lu; Changjian Wang; Guangheng Zhang; Deyong Ren; Jiang Hu; Lan Shen; Guojun Dong; Zhenyu Gao; Guang Chen; Dawei Xue; Longbiao Guo; Yongzhong Xing; Qian Qian; Li Zhu; Dali Zeng
Journal:  Plant Cell Physiol       Date:  2019-03-01       Impact factor: 4.927

2.  EMB-7L is required for embryogenesis and plant development in maize involved in RNA splicing of multiple chloroplast genes.

Authors:  Ningning Yuan; Jiechen Wang; Yong Zhou; Dong An; Qiao Xiao; Wenqin Wang; Yongrui Wu
Journal:  Plant Sci       Date:  2019-07-26       Impact factor: 4.729

3.  A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.

Authors:  Massimo Iorizzo; Shelby Ellison; Douglas Senalik; Peng Zeng; Pimchanok Satapoomin; Jiaying Huang; Megan Bowman; Marina Iovene; Walter Sanseverino; Pablo Cavagnaro; Mehtap Yildiz; Alicja Macko-Podgórni; Emilia Moranska; Ewa Grzebelus; Dariusz Grzebelus; Hamid Ashrafi; Zhijun Zheng; Shifeng Cheng; David Spooner; Allen Van Deynze; Philipp Simon
Journal:  Nat Genet       Date:  2016-05-09       Impact factor: 38.330

4.  Pentatricopeptide repeat protein PHOTOSYSTEM I BIOGENESIS FACTOR2 is required for splicing of ycf3.

Authors:  Xuemei Wang; Zhipan Yang; Yi Zhang; Wen Zhou; Aihong Zhang; Congming Lu
Journal:  J Integr Plant Biol       Date:  2020-05-15       Impact factor: 7.061

5.  A rapid ribosome profiling method elucidates chloroplast ribosome behavior in vivo.

Authors:  Reimo Zoschke; Kenneth P Watkins; Alice Barkan
Journal:  Plant Cell       Date:  2013-06-04       Impact factor: 11.277

6.  Genome-Wide Analysis of Simple Sequence Repeats in Bitter Gourd (Momordica charantia).

Authors:  Junjie Cui; Jiaowen Cheng; Dingguo Nong; Jiazhu Peng; Yafei Hu; Weiming He; Qianjun Zhou; Narinder P S Dhillon; Kailin Hu
Journal:  Front Plant Sci       Date:  2017-06-22       Impact factor: 5.753

7.  PPR14 Interacts With PPR-SMR1 and CRM Protein Zm-mCSF1 to Facilitate Mitochondrial Intron Splicing in Maize.

Authors:  Hong-Chun Wang; Zongliang Chen; Yan-Zhuo Yang; Feng Sun; Shuo Ding; Xiu-Lan Li; Chunhui Xu; Bao-Cai Tan
Journal:  Front Plant Sci       Date:  2020-06-12       Impact factor: 5.753

8.  The genomic landscape of molecular responses to natural drought stress in Panicum hallii.

Authors:  John T Lovell; Jerry Jenkins; David B Lowry; Sujan Mamidi; Avinash Sreedasyam; Xiaoyu Weng; Kerrie Barry; Jason Bonnette; Brandon Campitelli; Chris Daum; Sean P Gordon; Billie A Gould; Albina Khasanova; Anna Lipzen; Alice MacQueen; Juan Diego Palacio-Mejía; Christopher Plott; Eugene V Shakirov; Shengqiang Shu; Yuko Yoshinaga; Matt Zane; Dave Kudrna; Jason D Talag; Daniel Rokhsar; Jane Grimwood; Jeremy Schmutz; Thomas E Juenger
Journal:  Nat Commun       Date:  2018-12-06       Impact factor: 14.919

9.  Auto-regulatory feedback by RNA-binding proteins.

Authors:  Michaela Müller-McNicoll; Oliver Rossbach; Jingyi Hui; Jan Medenbach
Journal:  J Mol Cell Biol       Date:  2019-10-25       Impact factor: 6.216

10.  The elephant grass (Cenchrus purpureus) genome provides insights into anthocyanidin accumulation and fast growth.

Authors:  Qi Yan; Fan Wu; Pan Xu; Zongyi Sun; Jie Li; Lijuan Gao; Liyan Lu; Dongdong Chen; Meki Muktar; Chris Jones; Xianfeng Yi; Jiyu Zhang
Journal:  Mol Ecol Resour       Date:  2020-10-28       Impact factor: 7.090

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  13 in total

1.  Exploiting sterility and fertility variation in cytoplasmic male sterile vegetable crops.

Authors:  Fengyuan Xu; Xiaodong Yang; Na Zhao; Zhongyuan Hu; Sally A Mackenzie; Mingfang Zhang; Jinghua Yang
Journal:  Hortic Res       Date:  2022-01-18       Impact factor: 6.793

Review 2.  The Chloroplast Epitranscriptome: Factors, Sites, Regulation, and Detection Methods.

Authors:  Nikolay Manavski; Alexandre Vicente; Wei Chi; Jörg Meurer
Journal:  Genes (Basel)       Date:  2021-07-24       Impact factor: 4.096

3.  An Insight Into Pentatricopeptide-Mediated Chloroplast Necrosis via microRNA395a During Rhizoctonia solani Infection.

Authors:  Nagesh Srikakulam; Ashirbad Guria; Jeyalakshmi Karanthamalai; Vidya Murugesan; Vignesh Krishnan; Kasthuri Sundaramoorthy; Shakkhar Saha; Rudransh Singh; Thiveyarajan Victorathisayam; Veeraputhiran Rajapriya; Ganapathi Sridevi; Gopal Pandi
Journal:  Front Genet       Date:  2022-05-30       Impact factor: 4.772

4.  Genome-Wide Identification and Characterization of RNA/DNA Differences Associated with Drought Response in Wheat.

Authors:  Yan Pan; Mengqi Li; Jiaqian Huang; Wenqiu Pan; Tingrui Shi; Qifan Guo; Guang Yang; Xiaojun Nie
Journal:  Int J Mol Sci       Date:  2022-01-26       Impact factor: 5.923

5.  Molecular Analysis Uncovers the Mechanism of Fertility Restoration in Temperature-Sensitive Polima Cytoplasmic Male-Sterile Brassica napus.

Authors:  Qing Xiao; Huadong Wang; Hui Chen; Xiaohan Chen; Jing Wen; Cheng Dai; Chaozhi Ma; Jinxing Tu; Jinxiong Shen; Tingdong Fu; Bin Yi
Journal:  Int J Mol Sci       Date:  2021-11-18       Impact factor: 5.923

6.  Chloroplastic pentatricopeptide repeat proteins (PPR) in albino plantlets of Agave angustifolia Haw. reveal unexpected behavior.

Authors:  M Andrade-Marcial; R Pacheco-Arjona; E Góngora-Castillo; C De-la-Peña
Journal:  BMC Plant Biol       Date:  2022-07-19       Impact factor: 5.260

7.  Screening and Verification of Photosynthesis and Chloroplast-Related Genes in Mulberry by Comparative RNA-Seq and Virus-Induced Gene Silencing.

Authors:  Yong Li; Cui Yu; Rongli Mo; Zhixian Zhu; Zhaoxia Dong; Xingming Hu; Wen Deng; Chuxiong Zhuang
Journal:  Int J Mol Sci       Date:  2022-08-03       Impact factor: 6.208

Review 8.  An Analytical Review of the Structural Features of Pentatricopeptide Repeats: Strategic Amino Acids, Repeat Arrangements and Superhelical Architecture.

Authors:  Sailen Barik
Journal:  Int J Mol Sci       Date:  2021-05-20       Impact factor: 5.923

9.  Plastid Deficient 1 Is Essential for the Accumulation of Plastid-Encoded RNA Polymerase Core Subunit β and Chloroplast Development in Arabidopsis.

Authors:  Zhipan Yang; Mingxin Liu; Shunhua Ding; Yi Zhang; Huixia Yang; Xiaogang Wen; Wei Chi; Congming Lu; Qingtao Lu
Journal:  Int J Mol Sci       Date:  2021-12-20       Impact factor: 5.923

10.  A Novel Chloroplast Protein RNA Processing 8 Is Required for the Expression of Chloroplast Genes and Chloroplast Development in Arabidopsis thaliana.

Authors:  Mengmeng Kong; Yaozong Wu; Ziyuan Wang; Wantong Qu; Yixin Lan; Xin Chen; Yanyun Liu; Perveen Shahnaz; Zhongnan Yang; Qingbo Yu; Hualing Mi
Journal:  Front Plant Sci       Date:  2021-12-09       Impact factor: 5.753

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