Literature DB >> 33632061

Splicing regulation in brain and testis: common themes for highly specialized organs.

Chiara Naro1,2, Eleonora Cesari1,2, Claudio Sette1,3.   

Abstract

Expansion of the coding and regulatory capabilities of eukaryotic transcriptomes by alternative splicing represents one of the evolutionary forces underlying the increased structural complexity of metazoans. Brain and testes stand out as the organs that mostly exploit the potential of alternative splicing, thereby expressing the largest repertoire of splice variants. Herein, we will review organ-specific as well as common mechanisms underlying the high transcriptome complexity of these organs and discuss the impact exerted by this widespread alternative splicing regulation on the functionality and differentiation of brain and testicular cells.

Entities:  

Keywords:  Brain; alternative splicing; neuron differentiation; spermatogenesis; testis; transcriptomics

Mesh:

Year:  2021        PMID: 33632061      PMCID: PMC8018374          DOI: 10.1080/15384101.2021.1889187

Source DB:  PubMed          Journal:  Cell Cycle        ISSN: 1551-4005            Impact factor:   4.534


  107 in total

1.  The expression profile of the major mouse SPO11 isoforms indicates that SPO11beta introduces double strand breaks and suggests that SPO11alpha has an additional role in prophase in both spermatocytes and oocytes.

Authors:  Marina A Bellani; Kingsley A Boateng; Dianne McLeod; R Daniel Camerini-Otero
Journal:  Mol Cell Biol       Date:  2010-07-20       Impact factor: 4.272

2.  Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing.

Authors:  Qun Pan; Ofer Shai; Leo J Lee; Brendan J Frey; Benjamin J Blencowe
Journal:  Nat Genet       Date:  2008-11-02       Impact factor: 38.330

3.  The Mammalian Spermatogenesis Single-Cell Transcriptome, from Spermatogonial Stem Cells to Spermatids.

Authors:  Brian P Hermann; Keren Cheng; Anukriti Singh; Lorena Roa-De La Cruz; Kazadi N Mutoji; I-Chung Chen; Heidi Gildersleeve; Jake D Lehle; Max Mayo; Birgit Westernströer; Nathan C Law; Melissa J Oatley; Ellen K Velte; Bryan A Niedenberger; Danielle Fritze; Sherman Silber; Christopher B Geyer; Jon M Oatley; John R McCarrey
Journal:  Cell Rep       Date:  2018-11-06       Impact factor: 9.423

Review 4.  Alternative splicing: a pivotal step between eukaryotic transcription and translation.

Authors:  Alberto R Kornblihtt; Ignacio E Schor; Mariano Alló; Gwendal Dujardin; Ezequiel Petrillo; Manuel J Muñoz
Journal:  Nat Rev Mol Cell Biol       Date:  2013-02-06       Impact factor: 94.444

5.  Misregulation of an Activity-Dependent Splicing Network as a Common Mechanism Underlying Autism Spectrum Disorders.

Authors:  Mathieu Quesnel-Vallières; Zahra Dargaei; Manuel Irimia; Thomas Gonatopoulos-Pournatzis; Joanna Y Ip; Mingkun Wu; Timothy Sterne-Weiler; Shinichi Nakagawa; Melanie A Woodin; Benjamin J Blencowe; Sabine P Cordes
Journal:  Mol Cell       Date:  2016-12-15       Impact factor: 17.970

6.  MRG15 is required for pre-mRNA splicing and spermatogenesis.

Authors:  Naoki Iwamori; Kaoru Tominaga; Tetsuya Sato; Kevin Riehle; Tokuko Iwamori; Yasuyuki Ohkawa; Cristian Coarfa; Etsuro Ono; Martin M Matzuk
Journal:  Proc Natl Acad Sci U S A       Date:  2016-08-29       Impact factor: 11.205

7.  Splicing factor and exon profiling across human tissues.

Authors:  Pierre de la Grange; Lise Gratadou; Marc Delord; Martin Dutertre; Didier Auboeuf
Journal:  Nucleic Acids Res       Date:  2010-01-27       Impact factor: 16.971

Review 8.  Alternative splicing: the pledge, the turn, and the prestige : The key role of alternative splicing in human biological systems.

Authors:  L M Gallego-Paez; M C Bordone; A C Leote; N Saraiva-Agostinho; M Ascensão-Ferreira; N L Barbosa-Morais
Journal:  Hum Genet       Date:  2017-04-03       Impact factor: 4.132

9.  Genome-wide identification of splicing QTLs in the human brain and their enrichment among schizophrenia-associated loci.

Authors:  Atsushi Takata; Naomichi Matsumoto; Tadafumi Kato
Journal:  Nat Commun       Date:  2017-02-27       Impact factor: 14.919

10.  Sam68 regulates translation of target mRNAs in male germ cells, necessary for mouse spermatogenesis.

Authors:  Maria Paola Paronetto; Valeria Messina; Enrica Bianchi; Marco Barchi; Gillian Vogel; Costanzo Moretti; Fioretta Palombi; Mario Stefanini; Raffaele Geremia; Stéphane Richard; Claudio Sette
Journal:  J Cell Biol       Date:  2009-04-20       Impact factor: 10.539

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  7 in total

1.  Epigenetic Alterations in Cryopreserved Human Spermatozoa: Suspected Potential Functional Defects.

Authors:  Wanxue Wang; Plamen Todorov; Cheng Pei; Mengying Wang; Evgenia Isachenko; Gohar Rahimi; Peter Mallmann; Vladimir Isachenko
Journal:  Cells       Date:  2022-07-04       Impact factor: 7.666

2.  Dominant transcript expression profiles of human protein-coding genes interrogated with GTEx dataset.

Authors:  Kuo-Feng Tung; Chao-Yu Pan; Wen-Chang Lin
Journal:  Sci Rep       Date:  2022-04-28       Impact factor: 4.996

3.  Secondhand smoke affects reproductive functions by altering the mouse testis transcriptome, and leads to select intron retention in Pde1a.

Authors:  Stella Tommasi; Tevfik H Kitapci; Hannah Blumenfeld; Ahmad Besaratinia
Journal:  Environ Int       Date:  2022-01-18       Impact factor: 9.621

Review 4.  Transcriptome programs involved in the development and structure of the cerebellum.

Authors:  Donatella Farini; Daniela Marazziti; Maria Concetta Geloso; Claudio Sette
Journal:  Cell Mol Life Sci       Date:  2021-08-18       Impact factor: 9.261

Review 5.  Cryptic splicing: common pathological mechanisms involved in male infertility and neuronal diseases.

Authors:  Saad Aldalaqan; Caroline Dalgliesh; Sara Luzzi; Chileleko Siachisumo; Louise N Reynard; Ingrid Ehrmann; David J Elliott
Journal:  Cell Cycle       Date:  2021-12-20       Impact factor: 4.534

6.  EWS splicing regulation contributes to balancing Foxp1 isoforms required for neuronal differentiation.

Authors:  Veronica Verdile; Francesca Svetoni; Piergiorgio La Rosa; Gabriele Ferrante; Eleonora Cesari; Claudio Sette; Maria Paola Paronetto
Journal:  Nucleic Acids Res       Date:  2022-04-08       Impact factor: 16.971

7.  Integration of high-resolution promoter profiling assays reveals novel, cell type-specific transcription start sites across 115 human cell and tissue types.

Authors:  Jill E Moore; Xiao-Ou Zhang; Shaimae I Elhajjajy; Kaili Fan; Henry E Pratt; Fairlie Reese; Ali Mortazavi; Zhiping Weng
Journal:  Genome Res       Date:  2021-12-23       Impact factor: 9.438

  7 in total

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