Literature DB >> 33630960

Five key aspects of metaproteomics as a tool to understand functional interactions in host-associated microbiomes.

Fernanda Salvato1, Robert L Hettich2, Manuel Kleiner1.   

Abstract

Entities:  

Year:  2021        PMID： 33630960      PMCID： PMC7906368          DOI： 10.1371/journal.ppat.1009245

Source DB:  PubMed          Journal:  PLoS Pathog        ISSN： 1553-7366            Impact factor:   6.823


× No keyword cloud information.
  54 in total

1.  Evaluation of normalization methods on GeLC-MS/MS label-free spectral counting data to correct for variation during proteomic workflows.

Authors:  Emine Gokce; Christopher M Shuford; William L Franck; Ralph A Dean; David C Muddiman
Journal:  J Am Soc Mass Spectrom       Date:  2011-09-24       Impact factor: 3.109

2.  Automated 2D peptide separation on a 1D nano-LC-MS system.

Authors:  Paul Taylor; Peter A Nielsen; Morten B Trelle; Ole B Hørning; Michael B Andersen; Ole Vorm; Michael F Moran; Thomas Kislinger
Journal:  J Proteome Res       Date:  2009-03       Impact factor: 4.466

3.  The Perseus computational platform for comprehensive analysis of (prote)omics data.

Authors:  Stefka Tyanova; Tikira Temu; Pavel Sinitcyn; Arthur Carlson; Marco Y Hein; Tamar Geiger; Matthias Mann; Jürgen Cox
Journal:  Nat Methods       Date:  2016-06-27       Impact factor: 28.547

Review 4.  Protein-SIP in environmental studies.

Authors:  Nico Jehmlich; Carsten Vogt; Vanessa Lünsmann; Hans Hermann Richnow; Martin von Bergen
Journal:  Curr Opin Biotechnol       Date:  2016-04-23       Impact factor: 9.740

5.  A Sectioning and Database Enrichment Approach for Improved Peptide Spectrum Matching in Large, Genome-Guided Protein Sequence Databases.

Authors:  Praveen Kumar; James E Johnson; Caleb Easterly; Subina Mehta; Ray Sajulga; Brook Nunn; Pratik D Jagtap; Timothy J Griffin
Journal:  J Proteome Res       Date:  2020-05-26       Impact factor: 5.370

6.  Effects of diet on resource utilization by a model human gut microbiota containing Bacteroides cellulosilyticus WH2, a symbiont with an extensive glycobiome.

Authors:  Nathan P McNulty; Meng Wu; Alison R Erickson; Chongle Pan; Brian K Erickson; Eric C Martens; Nicholas A Pudlo; Brian D Muegge; Bernard Henrissat; Robert L Hettich; Jeffrey I Gordon
Journal:  PLoS Biol       Date:  2013-08-20       Impact factor: 8.029

7.  The STRING database in 2017: quality-controlled protein-protein association networks, made broadly accessible.

Authors:  Damian Szklarczyk; John H Morris; Helen Cook; Michael Kuhn; Stefan Wyder; Milan Simonovic; Alberto Santos; Nadezhda T Doncheva; Alexander Roth; Peer Bork; Lars J Jensen; Christian von Mering
Journal:  Nucleic Acids Res       Date:  2016-10-18       Impact factor: 16.971

8.  High-Throughput Stool Metaproteomics: Method and Application to Human Specimens.

Authors:  Carlos G Gonzalez; Hannah C Wastyk; Madeline Topf; Christopher D Gardner; Justin L Sonnenburg; Joshua E Elias
Journal:  mSystems       Date:  2020-06-30       Impact factor: 6.496

9.  Metaproteomics method to determine carbon sources and assimilation pathways of species in microbial communities.

Authors:  Manuel Kleiner; Xiaoli Dong; Tjorven Hinzke; Juliane Wippler; Erin Thorson; Bernhard Mayer; Marc Strous
Journal:  Proc Natl Acad Sci U S A       Date:  2018-05-29       Impact factor: 11.205

10.  Metaproteomics: Much More than Measuring Gene Expression in Microbial Communities.

Authors:  Manuel Kleiner
Journal:  mSystems       Date:  2019-05-21       Impact factor: 6.496
View more
  8 in total

1.  Elucidating Plant-Microbe-Environment Interactions Through Omics-Enabled Metabolic Modelling Using Synthetic Communities.

Authors:  Ashley E Beck; Manuel Kleiner; Anna-Katharina Garrell
Journal:  Front Plant Sci       Date:  2022-06-20       Impact factor: 6.627

Review 2.  Multi-Omics Strategies for Investigating the Microbiome in Toxicology Research.

Authors:  Ethan W Morgan; Gary H Perdew; Andrew D Patterson
Journal:  Toxicol Sci       Date:  2022-05-26       Impact factor: 4.109

3.  An integrated workflow for enhanced taxonomic and functional coverage of the mouse fecal metaproteome.

Authors:  Nicolas Nalpas; Lesley Hoyles; Viktoria Anselm; Tariq Ganief; Laura Martinez-Gili; Cristina Grau; Irina Droste-Borel; Laetitia Davidovic; Xavier Altafaj; Marc-Emmanuel Dumas; Boris Macek
Journal:  Gut Microbes       Date:  2021 Jan-Dec

Review 4.  Inferring early-life host and microbiome functions by mass spectrometry-based metaproteomics and metabolomics.

Authors:  Veronika Kuchařová Pettersen; Luis Caetano Martha Antunes; Antoine Dufour; Marie-Claire Arrieta
Journal:  Comput Struct Biotechnol J       Date:  2021-12-20       Impact factor: 7.271

5.  Evaluation of Sample Preservation and Storage Methods for Metaproteomics Analysis of Intestinal Microbiomes.

Authors:  Angie Mordant; Manuel Kleiner
Journal:  Microbiol Spectr       Date:  2021-12-15

6.  Identification of Antibiotic Resistance Proteins via MiCId's Augmented Workflow. A Mass Spectrometry-Based Proteomics Approach.

Authors:  Gelio Alves; Aleksey Ogurtsov; Roger Karlsson; Daniel Jaén-Luchoro; Beatriz Piñeiro-Iglesias; Francisco Salvà-Serra; Björn Andersson; Edward R B Moore; Yi-Kuo Yu
Journal:  J Am Soc Mass Spectrom       Date:  2022-05-02       Impact factor: 3.262

7.  Metaproteome plasticity sheds light on the ecology of the rumen microbiome and its connection to host traits.

Authors:  Goor Sasson; Sarah Moraïs; Fotini Kokou; Kristina Plate; Anke Trautwein-Schult; Elie Jami; Edward A Bayer; Dörte Becher; Itzhak Mizrahi
Journal:  ISME J       Date:  2022-08-16       Impact factor: 11.217

Review 8.  Metaproteomics to Decipher CF Host-Microbiota Interactions: Overview, Challenges and Future Perspectives.

Authors:  Pauline Hardouin; Raphael Chiron; Hélène Marchandin; Jean Armengaud; Lucia Grenga
Journal:  Genes (Basel)       Date:  2021-06-09       Impact factor: 4.096
  8 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.