Literature DB >> 33629280

Single-Cell RNA Sequencing of the Adult Mammalian Heart-State-of-the-Art and Future Perspectives.

Monika M Gladka1,2.   

Abstract

PURPOSE OF THE REVIEW: Cardiovascular disease remains the leading cause of death worldwide, resulting in cardiac dysfunction and, subsequently, heart failure (HF). Single-cell RNA sequencing (scRNA-seq) is a rapidly developing tool for studying the transcriptional heterogeneity in both healthy and diseased hearts. Wide applications of techniques like scRNA-seq could significantly contribute to uncovering the molecular mechanisms involved in the onset and progression to HF and contribute to the development of new, improved therapies. This review discusses several studies that successfully applied scRNA-seq to the mouse and human heart using various methods of tissue processing and downstream analysis. RECENT
FINDINGS: The application of scRNA-seq in the cardiovascular field is continuously expanding, providing new detailed insights into cardiac pathophysiology. Increased understanding of cardiac pathophysiology on the single-cell level will contribute to the development of novel, more effective therapeutic strategies. Here, we summarise the possible application of scRNA-seq to the adult mammalian heart.

Entities:  

Keywords:  Cardiac disease; Cardiomyocytes; Heart; Single-cell RNA sequencing

Year:  2021        PMID: 33629280      PMCID: PMC7954708          DOI: 10.1007/s11897-021-00504-3

Source DB:  PubMed          Journal:  Curr Heart Fail Rep        ISSN: 1546-9530


  34 in total

1.  Droplet barcoding for single-cell transcriptomics applied to embryonic stem cells.

Authors:  Allon M Klein; Linas Mazutis; Ilke Akartuna; Naren Tallapragada; Adrian Veres; Victor Li; Leonid Peshkin; David A Weitz; Marc W Kirschner
Journal:  Cell       Date:  2015-05-21       Impact factor: 41.582

2.  Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets.

Authors:  Evan Z Macosko; Anindita Basu; Rahul Satija; James Nemesh; Karthik Shekhar; Melissa Goldman; Itay Tirosh; Allison R Bialas; Nolan Kamitaki; Emily M Martersteck; John J Trombetta; David A Weitz; Joshua R Sanes; Alex K Shalek; Aviv Regev; Steven A McCarroll
Journal:  Cell       Date:  2015-05-21       Impact factor: 41.582

3.  Cellular communication in a 'virtual lab': going beyond the classical ligand-receptor interaction.

Authors:  Monika M Gladka
Journal:  Cardiovasc Res       Date:  2020-06-01       Impact factor: 10.787

4.  Single-cell messenger RNA sequencing reveals rare intestinal cell types.

Authors:  Dominic Grün; Anna Lyubimova; Lennart Kester; Kay Wiebrands; Onur Basak; Nobuo Sasaki; Hans Clevers; Alexander van Oudenaarden
Journal:  Nature       Date:  2015-08-19       Impact factor: 49.962

5.  NicheNet: modeling intercellular communication by linking ligands to target genes.

Authors:  Robin Browaeys; Wouter Saelens; Yvan Saeys
Journal:  Nat Methods       Date:  2019-12-09       Impact factor: 28.547

6.  Single-Cell Resolution of Temporal Gene Expression during Heart Development.

Authors:  Daniel M DeLaughter; Alexander G Bick; Hiroko Wakimoto; David McKean; Joshua M Gorham; Irfan S Kathiriya; John T Hinson; Jason Homsy; Jesse Gray; William Pu; Benoit G Bruneau; J G Seidman; Christine E Seidman
Journal:  Dev Cell       Date:  2016-11-10       Impact factor: 12.270

7.  A draft network of ligand-receptor-mediated multicellular signalling in human.

Authors:  Jordan A Ramilowski; Tatyana Goldberg; Jayson Harshbarger; Edda Kloppmann; Edda Kloppman; Marina Lizio; Venkata P Satagopam; Masayoshi Itoh; Hideya Kawaji; Piero Carninci; Burkhard Rost; Alistair R R Forrest
Journal:  Nat Commun       Date:  2015-07-22       Impact factor: 14.919

8.  Single-cell mRNA quantification and differential analysis with Census.

Authors:  Xiaojie Qiu; Andrew Hill; Jonathan Packer; Dejun Lin; Yi-An Ma; Cole Trapnell
Journal:  Nat Methods       Date:  2017-01-23       Impact factor: 28.547

9.  Single-cell analysis of murine fibroblasts identifies neonatal to adult switching that regulates cardiomyocyte maturation.

Authors:  Yin Wang; Fang Yao; Lipeng Wang; Zheng Li; Zongna Ren; Dandan Li; Mingzhi Zhang; Leng Han; Shi-Qiang Wang; Bingying Zhou; Li Wang
Journal:  Nat Commun       Date:  2020-05-22       Impact factor: 14.919

10.  Systematic Comparison of High-throughput Single-Cell and Single-Nucleus Transcriptomes during Cardiomyocyte Differentiation.

Authors:  Alan Selewa; Ryan Dohn; Heather Eckart; Stephanie Lozano; Bingqing Xie; Eric Gauchat; Reem Elorbany; Katherine Rhodes; Jonathan Burnett; Yoav Gilad; Sebastian Pott; Anindita Basu
Journal:  Sci Rep       Date:  2020-01-30       Impact factor: 4.996

View more
  4 in total

1.  Partial and complete loss of myosin binding protein H-like cause cardiac conduction defects.

Authors:  David Y Barefield; Sean Yamakawa; Ibrahim Tahtah; Jordan J Sell; Michael Broman; Brigitte Laforest; Sloane Harris; Alejandro Alvarez-Arce; Kelly N Araujo; Megan J Puckelwartz; J Andrew Wasserstrom; Glenn I Fishman; Elizabeth M McNally
Journal:  J Mol Cell Cardiol       Date:  2022-05-06       Impact factor: 5.763

Review 2.  Tailoring Cardiac Synthetic Transcriptional Modulation Towards Precision Medicine.

Authors:  Eric Schoger; Sara Lelek; Daniela Panáková; Laura Cecilia Zelarayán
Journal:  Front Cardiovasc Med       Date:  2022-01-14

Review 3.  Progress of Single-Cell RNA Sequencing Technology in Myocardial Infarction Research.

Authors:  Lanfang Li; Min Wang; Qiuxiao Ma; Yunxiu Li; Jingxue Ye; Xiaobo Sun; Guibo Sun
Journal:  Front Cardiovasc Med       Date:  2022-02-17

Review 4.  Early Protective Role of Inflammation in Cardiac Remodeling and Heart Failure: Focus on TNFα and Resident Macrophages.

Authors:  Sophie Besse; Sophie Nadaud; Elise Balse; Catherine Pavoine
Journal:  Cells       Date:  2022-04-06       Impact factor: 6.600

  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.