Literature DB >> 33627673

Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.

Puya Gharahkhani1, Eric Jorgenson2, Pirro Hysi3, Anthony P Khawaja4,5, Sarah Pendergrass6, Xikun Han7, Jue Sheng Ong7, Alex W Hewitt8,9, Ayellet V Segrè10, John M Rouhana10, Andrew R Hamel10, Robert P Igo11, Helene Choquet2, Ayub Qassim12, Navya S Josyula13, Jessica N Cooke Bailey11,14, Pieter W M Bonnemaijer15,16,17, Adriana Iglesias15,16,18, Owen M Siggs12, Terri L Young19, Veronique Vitart20, Alberta A H J Thiadens15,16, Juha Karjalainen21,22,23, Steffen Uebe24, Ronald B Melles25, K Saidas Nair26, Robert Luben5, Mark Simcoe3,27,28, Nishani Amersinghe29, Angela J Cree30, Rene Hohn31,32, Alicia Poplawski33, Li Jia Chen34, Shi-Song Rong10,34, Tin Aung35,36,37, Eranga Nishanthie Vithana35,38, Gen Tamiya39,40, Yukihiro Shiga41, Masayuki Yamamoto39, Toru Nakazawa41,42,43,44, Hannah Currant45, Ewan Birney45, Xin Wang46, Adam Auton46, Michelle K Lupton7, Nicholas G Martin7, Adeyinka Ashaye47, Olusola Olawoye47, Susan E Williams48, Stephen Akafo49, Michele Ramsay50, Kazuki Hashimoto41, Yoichiro Kamatani51,52, Masato Akiyama51,53, Yukihide Momozawa54, Paul J Foster55,56, Peng T Khaw55,56, James E Morgan57, Nicholas G Strouthidis55,56, Peter Kraft58, Jae H Kang59, Chi Pui Pang34, Francesca Pasutto24, Paul Mitchell60, Andrew J Lotery29,30, Aarno Palotie61,62,63, Cornelia van Duijn16,64, Jonathan L Haines11,14, Chris Hammond3, Louis R Pasquale65, Caroline C W Klaver15,16,66,67, Michael Hauser68,69,70,71, Chiea Chuen Khor72, David A Mackey8,9,73, Michiaki Kubo74, Ching-Yu Cheng35,36,37, Jamie E Craig75, Stuart MacGregor7, Janey L Wiggs10.   

Abstract

Primary open-angle glaucoma (POAG), is a heritable common cause of blindness world-wide. To identify risk loci, we conduct a large multi-ethnic meta-analysis of genome-wide association studies on a total of 34,179 cases and 349,321 controls, identifying 44 previously unreported risk loci and confirming 83 loci that were previously known. The majority of loci have broadly consistent effects across European, Asian and African ancestries. Cross-ancestry data improve fine-mapping of causal variants for several loci. Integration of multiple lines of genetic evidence support the functional relevance of the identified POAG risk loci and highlight potential contributions of several genes to POAG pathogenesis, including SVEP1, RERE, VCAM1, ZNF638, CLIC5, SLC2A12, YAP1, MXRA5, and SMAD6. Several drug compounds targeting POAG risk genes may be potential glaucoma therapeutic candidates.

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Year:  2021        PMID: 33627673      PMCID: PMC7904932          DOI: 10.1038/s41467-020-20851-4

Source DB:  PubMed          Journal:  Nat Commun        ISSN: 2041-1723            Impact factor:   14.919


  89 in total

1.  Probabilistic fine-mapping of transcriptome-wide association studies.

Authors:  Nicholas Mancuso; Malika K Freund; Ruth Johnson; Huwenbo Shi; Gleb Kichaev; Alexander Gusev; Bogdan Pasaniuc
Journal:  Nat Genet       Date:  2019-03-29       Impact factor: 38.330

2.  Integration of summary data from GWAS and eQTL studies predicts complex trait gene targets.

Authors:  Zhihong Zhu; Futao Zhang; Han Hu; Andrew Bakshi; Matthew R Robinson; Joseph E Powell; Grant W Montgomery; Michael E Goddard; Naomi R Wray; Peter M Visscher; Jian Yang
Journal:  Nat Genet       Date:  2016-03-28       Impact factor: 38.330

3.  Microvasculature of the Optic Nerve Head and Peripapillary Region in Patients With Primary Open-Angle Glaucoma.

Authors:  Rafaella Nascimento E Silva; Carolina A Chiou; Mengyu Wang; Haobing Wang; Marissa K Shoji; Jonathan C Chou; Erica E D'Souza; Scott H Greenstein; Stacey C Brauner; Milton R Alves; Louis R Pasquale; Lucy Q Shen
Journal:  J Glaucoma       Date:  2019-04       Impact factor: 2.503

4.  Integrative approaches for large-scale transcriptome-wide association studies.

Authors:  Alexander Gusev; Arthur Ko; Huwenbo Shi; Gaurav Bhatia; Wonil Chung; Brenda W J H Penninx; Rick Jansen; Eco J C de Geus; Dorret I Boomsma; Fred A Wright; Patrick F Sullivan; Elina Nikkola; Marcus Alvarez; Mete Civelek; Aldons J Lusis; Terho Lehtimäki; Emma Raitoharju; Mika Kähönen; Ilkka Seppälä; Olli T Raitakari; Johanna Kuusisto; Markku Laakso; Alkes L Price; Päivi Pajukanta; Bogdan Pasaniuc
Journal:  Nat Genet       Date:  2016-02-08       Impact factor: 38.330

5.  Isolation and Characterization of primary human trabecular meshwork cells from segmental flow regions: New tools for understanding segmental flow.

Authors:  Julia Staverosky; Kamesh Dhamodaran; Ted Acott; VijayKrishna Raghunathan; Janice Vranka
Journal:  Exp Eye Res       Date:  2020-05-04       Impact factor: 3.467

6.  Genome-wide association analysis identifies TXNRD2, ATXN2 and FOXC1 as susceptibility loci for primary open-angle glaucoma.

Authors:  Jessica N Cooke Bailey; Stephanie J Loomis; Jae H Kang; R Rand Allingham; Puya Gharahkhani; Chiea Chuen Khor; Kathryn P Burdon; Hugues Aschard; Daniel I Chasman; Robert P Igo; Pirro G Hysi; Craig A Glastonbury; Allison Ashley-Koch; Murray Brilliant; Andrew A Brown; Donald L Budenz; Alfonso Buil; Ching-Yu Cheng; Hyon Choi; William G Christen; Gary Curhan; Immaculata De Vivo; John H Fingert; Paul J Foster; Charles Fuchs; Douglas Gaasterland; Terry Gaasterland; Alex W Hewitt; Frank Hu; David J Hunter; Anthony P Khawaja; Richard K Lee; Zheng Li; Paul R Lichter; David A Mackey; Peter McGuffin; Paul Mitchell; Sayoko E Moroi; Shamira A Perera; Keating W Pepper; Qibin Qi; Tony Realini; Julia E Richards; Paul M Ridker; Eric Rimm; Robert Ritch; Marylyn Ritchie; Joel S Schuman; William K Scott; Kuldev Singh; Arthur J Sit; Yeunjoo E Song; Rulla M Tamimi; Fotis Topouzis; Ananth C Viswanathan; Shefali Setia Verma; Douglas Vollrath; Jie Jin Wang; Nicole Weisschuh; Bernd Wissinger; Gadi Wollstein; Tien Y Wong; Brian L Yaspan; Donald J Zack; Kang Zhang; Epic-Norfolk Eye Study; Robert N Weinreb; Margaret A Pericak-Vance; Kerrin Small; Christopher J Hammond; Tin Aung; Yutao Liu; Eranga N Vithana; Stuart MacGregor; Jamie E Craig; Peter Kraft; Gareth Howell; Michael A Hauser; Louis R Pasquale; Jonathan L Haines; Janey L Wiggs
Journal:  Nat Genet       Date:  2016-01-11       Impact factor: 38.330

7.  Classification of common human diseases derived from shared genetic and environmental determinants.

Authors:  Kanix Wang; Hallie Gaitsch; Hoifung Poon; Nancy J Cox; Andrey Rzhetsky
Journal:  Nat Genet       Date:  2017-08-07       Impact factor: 38.330

8.  Retinal transcriptome and eQTL analyses identify genes associated with age-related macular degeneration.

Authors:  Rinki Ratnapriya; Olukayode A Sosina; Margaret R Starostik; Madeline Kwicklis; Rebecca J Kapphahn; Lars G Fritsche; Ashley Walton; Marios Arvanitis; Linn Gieser; Alexandra Pietraszkiewicz; Sandra R Montezuma; Emily Y Chew; Alexis Battle; Gonçalo R Abecasis; Deborah A Ferrington; Nilanjan Chatterjee; Anand Swaroop
Journal:  Nat Genet       Date:  2019-02-11       Impact factor: 38.330

9.  A multiethnic genome-wide association study of primary open-angle glaucoma identifies novel risk loci.

Authors:  Hélène Choquet; Seyyedhassan Paylakhi; Stephen C Kneeland; Khanh K Thai; Thomas J Hoffmann; Jie Yin; Mark N Kvale; Yambazi Banda; Nicholas G Tolman; Pete A Williams; Catherine Schaefer; Ronald B Melles; Neil Risch; Simon W M John; K Saidas Nair; Eric Jorgenson
Journal:  Nat Commun       Date:  2018-06-11       Impact factor: 14.919

Review 10.  Intracellular Chloride Channels: Novel Biomarkers in Diseases.

Authors:  Shubha Gururaja Rao; Neel J Patel; Harpreet Singh
Journal:  Front Physiol       Date:  2020-02-14       Impact factor: 4.566

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  35 in total

1.  EFEMP1 rare variants cause familial juvenile-onset open-angle glaucoma.

Authors:  Edward Ryan A Collantes; Manuel S Delfin; Baojian Fan; Justine May R Torregosa; Christine Siguan-Bell; Nilo Vincent de Guzman Florcruz; Jose Maria D Martinez; Barbara Joy Masna-Hidalgo; Vincent Paul T Guzman; Jewel Faith Anotado-Flores; Faye D Levina; Sophia Raine C Hernandez; Anthony A Collantes; Michael Carreon Sibulo; Shisong Rong; Janey L Wiggs
Journal:  Hum Mutat       Date:  2021-12-28       Impact factor: 4.878

2.  Core transcription programs controlling injury-induced neurodegeneration of retinal ganglion cells.

Authors:  Feng Tian; Yuyan Cheng; Songlin Zhou; Qianbin Wang; Aboozar Monavarfeshani; Kun Gao; Weiqian Jiang; Riki Kawaguchi; Qing Wang; Mingjun Tang; Ryan Donahue; Huyan Meng; Yu Zhang; Anne Jacobi; Wenjun Yan; Jiani Yin; Xinyi Cai; Zhiyun Yang; Shane Hegarty; Joanna Stanicka; Phillip Dmitriev; Daniel Taub; Junjie Zhu; Clifford J Woolf; Joshua R Sanes; Daniel H Geschwind; Zhigang He
Journal:  Neuron       Date:  2022-06-28       Impact factor: 18.688

3.  The Prevalence of Autoimmune Diseases in Patients with Primary Open-Angle Glaucoma Undergoing Ophthalmic Surgeries.

Authors:  Maltish M Lorenzo; Julia Devlin; Chhavi Saini; Kin-Sang Cho; Eleftherios I Paschalis; Dong Feng Chen; Rafaella Nascimento E Silva; Sherleen H Chen; Milica A Margeta; Courtney Ondeck; David Solá-Del Valle; James Chodosh; Joseph B Ciolino; Roberto Pineda; Louis R Pasquale; Lucy Q Shen
Journal:  Ophthalmol Glaucoma       Date:  2021-08-18

Review 4.  From Bench to Bed: The Current Genome Editing Therapies for Glaucoma.

Authors:  Meihui He; Rong Rong; Dan Ji; Xiaobo Xia
Journal:  Front Cell Dev Biol       Date:  2022-05-16

5.  High Blood Pressure and Intraocular Pressure: A Mendelian Randomization Study.

Authors:  Denis Plotnikov; Yu Huang; Anthony P Khawaja; Paul J Foster; Zhuoting Zhu; Jeremy A Guggenheim; Mingguang He
Journal:  Invest Ophthalmol Vis Sci       Date:  2022-06-01       Impact factor: 4.925

6.  Bioinformatic Prioritization and Functional Annotation of GWAS-Based Candidate Genes for Primary Open-Angle Glaucoma.

Authors:  Nigus G Asefa; Zoha Kamali; Satyajit Pereira; Ahmad Vaez; Nomdo Jansonius; Arthur A Bergen; Harold Snieder
Journal:  Genes (Basel)       Date:  2022-06-13       Impact factor: 4.141

7.  Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images.

Authors:  Hannah Currant; Pirro Hysi; Tomas W Fitzgerald; Puya Gharahkhani; Pieter W M Bonnemaijer; Anne Senabouth; Alex W Hewitt; Denize Atan; Tin Aung; Jason Charng; Hélène Choquet; Jamie Craig; Peng T Khaw; Caroline C W Klaver; Michiaki Kubo; Jue-Sheng Ong; Louis R Pasquale; Charles A Reisman; Maciej Daniszewski; Joseph E Powell; Alice Pébay; Mark J Simcoe; Alberta A H J Thiadens; Cornelia M van Duijn; Seyhan Yazar; Eric Jorgenson; Stuart MacGregor; Chris J Hammond; David A Mackey; Janey L Wiggs; Paul J Foster; Praveen J Patel; Ewan Birney; Anthony P Khawaja
Journal:  PLoS Genet       Date:  2021-05-12       Impact factor: 5.917

8.  Automated AI labeling of optic nerve head enables insights into cross-ancestry glaucoma risk and genetic discovery in >280,000 images from UKB and CLSA.

Authors:  Xikun Han; Kaiah Steven; Ayub Qassim; Henry N Marshall; Cameron Bean; Michael Tremeer; Jiyuan An; Owen M Siggs; Puya Gharahkhani; Jamie E Craig; Alex W Hewitt; Maciej Trzaskowski; Stuart MacGregor
Journal:  Am J Hum Genet       Date:  2021-06-01       Impact factor: 11.025

9.  Paired Optic Nerve Microvasculature and Nailfold Capillary Measurements in Primary Open-Angle Glaucoma.

Authors:  Marissa K Shoji; Clara C Cousins; Chhavi Saini; Rafaella Nascimento E Silva; Mengyu Wang; Stacey C Brauner; Scott H Greenstein; Louis R Pasquale; Lucy Q Shen
Journal:  Transl Vis Sci Technol       Date:  2021-06-01       Impact factor: 3.283

10.  Eyes of Africa: The Genetics of Blindness: Study Design and Methodology.

Authors:  Olusola Olawoye; Chimdi Chuka-Okosa; Onoja Akpa; Tony Realini; Michael Hauser; Adeyinka Ashaye
Journal:  BMC Ophthalmol       Date:  2021-07-09       Impact factor: 2.209

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