Literature DB >> 33627141

Re-evaluating experimental validation in the Big Data Era: a conceptual argument.

Mohieddin Jafari1, Yuanfang Guan2, David C Wedge3, Naser Ansari-Pour4.   

Abstract

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Year:  2021        PMID： 33627141      PMCID： PMC7903713          DOI： 10.1186/s13059-021-02292-4

Source DB:  PubMed          Journal:  Genome Biol        ISSN： 1474-7596            Impact factor:   13.583


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  22 in total

1.  The complete gene sequence of titin, expression of an unusual approximately 700-kDa titin isoform, and its interaction with obscurin identify a novel Z-line to I-band linking system.

Authors:  M L Bang; T Centner; F Fornoff; A J Geach; M Gotthardt; M McNabb; C C Witt; D Labeit; C C Gregorio; H Granzier; S Labeit
Journal:  Circ Res       Date:  2001-11-23       Impact factor: 17.367

2.  Use of RNA-seq data to identify and validate RT-qPCR reference genes for studying the tomato-Pseudomonas pathosystem.

Authors:  Marina A Pombo; Yi Zheng; Zhangjun Fei; Gregory B Martin; Hernan G Rosli
Journal:  Sci Rep       Date:  2017-03-20       Impact factor: 4.379

3.  All biology is computational biology.

Authors:  Florian Markowetz
Journal:  PLoS Biol       Date:  2017-03-09       Impact factor: 8.029

4.  Why, When and How to Adjust Your P Values?

Authors:  Mohieddin Jafari; Naser Ansari-Pour
Journal:  Cell J       Date:  2018-08-01       Impact factor: 2.479

5.  Putting benchmarks in their rightful place: The heart of computational biology.

Authors:  Bjoern Peters; Steven E Brenner; Edwin Wang; Donna Slonim; Maricel G Kann
Journal:  PLoS Comput Biol       Date:  2018-11-08       Impact factor: 4.475

6.  Integrating mapping-, assembly- and haplotype-based approaches for calling variants in clinical sequencing applications.

Authors:  Andy Rimmer; Hang Phan; Iain Mathieson; Zamin Iqbal; Stephen R F Twigg; Andrew O M Wilkie; Gil McVean; Gerton Lunter
Journal:  Nat Genet       Date:  2014-07-13       Impact factor: 38.330

7.  Western blots versus selected reaction monitoring assays: time to turn the tables?

Authors:  Ruedi Aebersold; Alma L Burlingame; Ralph A Bradshaw
Journal:  Mol Cell Proteomics       Date:  2013-06-10       Impact factor: 5.911

8.  Mutational heterogeneity in cancer and the search for new cancer-associated genes.

Authors:  Michael S Lawrence; Petar Stojanov; Paz Polak; Gregory V Kryukov; Kristian Cibulskis; Andrey Sivachenko; Scott L Carter; Chip Stewart; Craig H Mermel; Steven A Roberts; Adam Kiezun; Peter S Hammerman; Aaron McKenna; Yotam Drier; Lihua Zou; Alex H Ramos; Trevor J Pugh; Nicolas Stransky; Elena Helman; Jaegil Kim; Carrie Sougnez; Lauren Ambrogio; Elizabeth Nickerson; Erica Shefler; Maria L Cortés; Daniel Auclair; Gordon Saksena; Douglas Voet; Michael Noble; Daniel DiCara; Pei Lin; Lee Lichtenstein; David I Heiman; Timothy Fennell; Marcin Imielinski; Bryan Hernandez; Eran Hodis; Sylvan Baca; Austin M Dulak; Jens Lohr; Dan-Avi Landau; Catherine J Wu; Jorge Melendez-Zajgla; Alfredo Hidalgo-Miranda; Amnon Koren; Steven A McCarroll; Jaume Mora; Brian Crompton; Robert Onofrio; Melissa Parkin; Wendy Winckler; Kristin Ardlie; Stacey B Gabriel; Charles W M Roberts; Jaclyn A Biegel; Kimberly Stegmaier; Adam J Bass; Levi A Garraway; Matthew Meyerson; Todd R Golub; Dmitry A Gordenin; Shamil Sunyaev; Eric S Lander; Gad Getz
Journal:  Nature       Date:  2013-06-16       Impact factor: 49.962

9.  Models in biology: 'accurate descriptions of our pathetic thinking'.

Authors:  Jeremy Gunawardena
Journal:  BMC Biol       Date:  2014-04-30       Impact factor: 7.431

10.  Multi-site clonality analysis uncovers pervasive heterogeneity across melanoma metastases.

Authors:  Roy Rabbie; Naser Ansari-Pour; Oliver Cast; Doreen Lau; Francis Scott; Sarah J Welsh; Christine Parkinson; Leila Khoja; Luiza Moore; Mark Tullett; Kim Wong; Ingrid Ferreira; Julia M Martínez Gómez; Mitchell Levesque; Ferdia A Gallagher; Alejandro Jiménez-Sánchez; Laura Riva; Martin L Miller; Kieren Allinson; Peter J Campbell; Pippa Corrie; David C Wedge; David J Adams
Journal:  Nat Commun       Date:  2020-08-27       Impact factor: 14.919
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  2 in total

1.  A Novel Machine Learning 13-Gene Signature: Improving Risk Analysis and Survival Prediction for Clear Cell Renal Cell Carcinoma Patients.

Authors:  Patrick Terrematte; Dhiego Souto Andrade; Josivan Justino; Beatriz Stransky; Daniel Sabino A de Araújo; Adrião D Dória Neto
Journal:  Cancers (Basel)       Date:  2022-04-24       Impact factor: 6.575

2.  Bipartite network models to design combination therapies in acute myeloid leukaemia.

Authors:  Mohieddin Jafari; Mehdi Mirzaie; Jie Bao; Farnaz Barneh; Shuyu Zheng; Johanna Eriksson; Caroline A Heckman; Jing Tang
Journal:  Nat Commun       Date:  2022-04-19       Impact factor: 17.694
  2 in total

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