| Literature DB >> 33623416 |
Kangjian Song1, Fu He1, Yang Xin1, Ge Guan1, Junyu Huo1, Qingwei Zhu1, Ning Fan1, Yuan Guo1, Yunjin Zang1, Liqun Wu1.
Abstract
PURPOSE: To explore the value of Tuberous sclerosis complex 2 (TSC2) mutations in evaluating the early recurrence of hepatocellular carcinoma (HCC) patients underwent hepatectomy. PATIENTS AND METHODS: A total of 183 HCC patients were enrolled. Next-generation sequencing was performed on tumor tissues to analyze genomic alterations, tumor mutational burden and variant allele fraction (VAF). The associations between TSC2 mutations and recurrence rate within 1 year, RFS and OS after hepatectomy were analyzed.Entities:
Keywords: early recurrence; gene mutation; hepatocellular carcinoma; next-generation sequencing; tuberous sclerosis complex 2
Year: 2021 PMID: 33623416 PMCID: PMC7896791 DOI: 10.2147/PGPM.S294307
Source DB: PubMed Journal: Pharmgenomics Pers Med ISSN: 1178-7066
Clinicopathological Characteristics of HCC Patients
| Clinicopathological Characteristics | Number of Patients |
|---|---|
| Age (<65/≥65) | 144/39 |
| Gender (male/female) | 156/27 |
| Hypertension (no/yes) | 137/46 |
| Diabetes (no/yes) | 162/21 |
| Family history of cancer (no/yes) | 128/55 |
| History of alcoholism (no/yes) | 116/67 |
| HBsAg (negative/positive) | 22/161 |
| HBV-DNA (<1E+003/≥1E+003IU/mL) | 126/57 |
| Anti-hepatitis virus treatment (no/yes) | 103/80 |
| AFP (<400/≥400μg/L) | 130/53 |
| Tumor number (single/multiple) | 130/53 |
| Tumor size (≤5cm/>5cm) | 118/65 |
| BCLC (0-A/B-C) | 127/56 |
| Macrovascular invasion (no/yes) | 163/20 |
| Edmondson grade (I–II/III–IV) | 93/90 |
| MVI (no/yes) | 93/90 |
Alterations of TSC2 in 23 Patients
| Patients | Alteration Type | Coding DNA Change | VAF |
|---|---|---|---|
| 1 | SNV | 139-2A>G | 0.31 |
| 2 | SNV | 2299del | 0.29 |
| 3 | SNV | 1906G>T | 0.08 |
| 4 | SNV | 319G>A | 0.12 |
| 5 | SNV | 849-2A>C | 0.12 |
| 6 | SNV | 3496del | 0.19 |
| 7 | SNV | 1643del | 0.15 |
| 8 | InDel | 1716+1904_3035del | 0.49 |
| 9 | SNV | 337-2A>C | 0.20 |
| 10 | SNV | 4037C>A | 0.44 |
| 11 | InDel | 110_139-344del | 0.22 |
| 12 | CNV | Gene deletion | – |
| 13 | InDel | 3560_3561del | 0.07 |
| 14 | SNV | 5138G>A | 0.63 |
| 15 | InDel | 1717-121_1840-167del | 0.97 |
| 16 | InDel | 1362-133_1716+507del | 0.11 |
| 17 | SNV | 648+1G>T | 0.29 |
| 18 | SNV | 3651_3652insA | 0.25 |
| 19 | InDel | exon2_exon3del | – |
| 20 | SNV | 65G>C | 0.01 |
| 21 | SNV | 1257+2T>A | 0.09 |
| 22 | InDel | 1444-235_1665del | 0.13 |
| 23 | SNV | 2242G>T | 0.26 |
The Correlation Between TSC2 Mutations and Clinicopathological Characteristics
| Clinicopathological Characteristics | TSC2 | |||
|---|---|---|---|---|
| Wild Type | Mutant | |||
| Age (<65/≥65) | 125/35 | 19/4 | – | 0.788 |
| Gender (male/female) | 138/22 | 18/5 | – | 0.345 |
| Hypertension (no/yes) | 116/44 | 21/2 | 3.779 | 0.052 |
| Diabetes (no/yes) | 141/19 | 21/2 | – | 1.000 |
| Family history of cancer (no/yes) | 111/49 | 17/6 | 0.197 | 0.657 |
| History of alcoholism (no/yes) | 99/61 | 17/6 | 1.256 | 0.262 |
| HBsAg (negative/positive) | 22/138 | 0/23 | – | 0.081 |
| AFP (<400/≥400μg/L) | 115/45 | 15/8 | 0.433 | 0.510 |
| Tumor number (single/multiple) | 115/45 | 15/8 | 0.433 | 0.510 |
| Tumor size (≤5cm/>5cm) | 102/58 | 16/7 | 0.297 | 0.586 |
| BCLC (0-A/B-C) | 112/48 | 15/8 | 0.217 | 0.642 |
| Macrovascular invasion (no/yes) | 143/17 | 20/3 | – | 0.722 |
| Edmondson grade (I–II/III–IV) | 86/74 | 7/16 | 4.374 | 0.036 |
| MVI (no/yes) | 87/73 | 6/17 | 6.438 | 0.011 |
The Correlation Between VAF of TSC2 Mutations and Clinicopathological Characteristics
| Clinicopathological Characteristics | VAF of TSC2 | ||
|---|---|---|---|
| Median | |||
| Age (<65/≥65) | 0.220/0.195 | 48.500 | 0.654 |
| Gender (male/female) | 0.210/0.130 | 25.500 | 0.240 |
| Family history of cancer (no/yes) | 0.190/0.255 | 29.000 | 0.698 |
| History of alcoholism (no/yes) | 0.200/0.200 | 42.500 | 0.850 |
| AFP (<400/≥400μg/L) | 0.225/0.130 | 38.000 | 0.443 |
| Tumor number (single/multiple) | 0.170/0.220 | 35.500 | 0.322 |
| Tumor size (≤5cm/>5cm) | 0.150/0.400 | 19.000 | 0.045 |
| BCLC (0-A/B-C) | 0.170/0.220 | 35.500 | 0.322 |
| Edmondson grade (I–II/III–IV) | 0.235/0.190 | 44.500 | 0.970 |
| MVI (no/yes) | 0.080/0.235 | 13.000 | 0.025 |
The Correlation Between TSC2 Mutations and Other Genes
| Other Mutant Genes | TSC2 | |||
|---|---|---|---|---|
| Wild Type | Mutant | χ2 | ||
| TP53 (Wild type/Mutant) | 80/80 | 4/19 | 8.611 | 0.003 |
| TERT (Wild type/Mutant) | 94/66 | 14/9 | 0.037 | 0.847 |
| CTNNB1 (Wild type/Mutant) | 121/39 | 20/3 | 1.460 | 0.227 |
| AXIN1 (Wild type/Mutant) | 138/22 | 18/5 | – | 0.345 |
| TMB (<8.5/≥8.5 mutations/Mb) | 115/45 | 18/5 | 0.413 | 0.520 |
The Correlation Between Different Factors and Recurrence Within 1 Year After Hepatectomy
| Variables | Univariate Analysis | Multivariate Analysis | ||||
|---|---|---|---|---|---|---|
| n/n | χ2 | HR | 95% CI | |||
| Age (<65/≥65) | 46/11 | 0.202 | 0.653 | |||
| Gender (male/female) | 50/7 | 0.316 | 0.574 | |||
| Hypertension (no/yes) | 49/8 | 3.638 | 0.056 | |||
| Diabetes (no/yes) | 53/4 | 1.213 | 0.271 | |||
| Family history of cancer (no/yes) | 42/15 | 0.774 | 0.379 | |||
| History of alcoholism (no/yes) | 36/21 | 0.000 | 0.995 | |||
| HBsAg (negative/positive) | 3/54 | 3.179 | 0.075 | |||
| HBV-DNA (<1E+003/≥1E+003IU/mL) | 35/22 | 1.197 | 0.274 | |||
| Anti-hepatitis virus treatment (no/yes) | 34/23 | 0.167 | 0.682 | |||
| AFP (<400/≥400μg/L) | 32/25 | 10.844 | 0.001 | 2.327 | 1.018–5.323 | 0.045 |
| BCLC (0-A/B-C) | 23/34 | 37.065 | 0.000 | 8.628 | 3.836–19.405 | 0.000 |
| Liver fibrosis (S1S2/S3S4) | 14/41 | 0.277 | 0.598 | |||
| Edmondson grade (I–II/III–IV) | 24/33 | 4.318 | 0.038 | – | – | 0.933 |
| MVI (no/yes) | 19/38 | 11.376 | 0.001 | – | – | 0.161 |
| TP53 (Wild type/Mutant) | 23/34 | 0.993 | 0.319 | |||
| TERT (Wild type/Mutant) | 31/26 | 0.914 | 0.339 | |||
| CTNNB1 (Wild type/Mutant) | 45/12 | 0.106 | 0.744 | |||
| AXIN1 (Wild type/Mutant) | 50/7 | 0.161 | 0.688 | |||
| TSC2 (Wild type/Mutant) | 45/12 | 5.922 | 0.015 | 3.885 | 1.295–11.653 | 0.015 |
| TMB (<8.5/≥8.5 mutations/Mb) | 45/12 | 0.035 | 0.852 | |||
Figure 1Survival curves of RFS according to TSC2 mutational status evaluated by Kaplan–Meier method (n=183). There were 23 patients with a TSC2 mutation and 160 patients without TSC2 mutation. The median RFS of patients with a TSC2 mutation was 7.4 months, while the median RFS of patients without TSC2 mutation was 30.8 months. Patients with a TSC2 mutation had significantly poorer RFS than others (p=0.010).
Figure 2Survival curves of OS according to TSC2 mutational status evaluated by Kaplan–Meier method (n=183). There were 23 patients with a TSC2 mutation and 160 patients without TSC2 mutation. TSC2 mutations did not significantly affect overall survival of patients (p=0.480).
Univariate and Multivariate Cox Regression Analysis of Clinicopathological Characteristics and Gene Mutations with RFS of HCC Patients
| Variables | Univariate Analysis | Multivariate Analysis | ||||
|---|---|---|---|---|---|---|
| HR | 95% CI | HR | 95% CI | |||
| Age (<65/≥65) | 0.741 | 0.430–1.274 | 0.278 | |||
| Gender (male/female) | 0.674 | 0.349–1.303 | 0.241 | |||
| Hypertension (no/yes) | 0.474 | 0.263–0.855 | 0.013 | – | – | 0.109 |
| Diabetes (no/yes) | 0.642 | 0.296–1.390 | 0.261 | |||
| Family history of cancer (no/yes) | 0.892 | 0.560–1.419 | 0.629 | |||
| History of alcoholism (no/yes) | 0.881 | 0.564–1.376 | 0.578 | |||
| HBsAg (negative/positive) | 1.939 | 0.895–4.200 | 0.093 | |||
| HBV-DNA (<1E+003/≥1E+003IU/mL) | 1.090 | 0.644–1.846 | 0.749 | |||
| Anti-hepatitis virus treatment (no/yes) | 0.937 | 0.611–1.436 | 0.765 | |||
| AFP (<400/≥400μg/L) | 2.274 | 1.478–3.498 | 0.000 | 1.715 | 1.093–2.693 | 0.019 |
| BCLC (0-A/B-C) | 3.513 | 2.290–5.388 | 0.000 | 3.070 | 1.971–4.783 | 0.000 |
| Liver fibrosis (S1S2/S3S4) | 1.162 | 0.709–1.903 | 0.551 | |||
| Edmondson grade (I–II/III–IV) | 1.542 | 1.009–2.358 | 0.046 | – | – | 0.807 |
| MVI (no/yes) | 1.947 | 1.264–2.998 | 0.002 | – | – | 0.483 |
| TP53 (Wild type/Mutant) | 0.948 | 0.622–1.444 | 0.804 | |||
| TERT (Wild type/Mutant) | 1.093 | 0.713–1.675 | 0.685 | |||
| CTNNB1 (Wild type/Mutant) | 1.209 | 0.755–1.936 | 0.430 | |||
| AXIN1 (Wild type/Mutant) | 0.914 | 0.497–1.681 | 0.772 | |||
| TSC2 (Wild type/Mutant) | 2.043 | 1.169–3.570 | 0.012 | 1.861 | 1.061–3.267 | 0.030 |
| TSC1 (Wild type/Mutant) | 1.405 | 0.444–4.447 | 0.563 | |||
| TMB (<8.5/≥8.5 mutations/Mb) | 0.685 | 0.412–1.139 | 0.145 | |||
Figure 3Survival curves of RFS according to TSC2 mutational status evaluated by Kaplan–Meier method in patients with preoperative serum AFP level above 400μg/L (n=53). Median RFS between patients with a TSC2 mutation and patients without TSC2 mutation was 3.3 vs 10.7 months (p=0.061).
Figure 4Survival curves of RFS according to TSC2 mutational status evaluated by Kaplan–Meier method in patients with BCLC stage B-C (n=55). Median RFS between patients with a TSC2 mutation and patients without TSC2 mutation was 2.5 vs 6.8 months (p=0.118).