Literature DB >> 33617456

A Comprehensive Explanation Framework for Biomedical Time Series Classification.

Praharsh Ivaturi, Matteo Gadaleta, Amitabh C Pandey, Michael Pazzani, Steven R Steinhubl, Giorgio Quer.   

Abstract

In this study, we propose a post-hoc explainability framework for deep learning models applied to quasi-periodic biomedical time-series classification. As a case study, we focus on the problem of atrial fibrillation (AF) detection from electrocardiography signals, which has strong clinical relevance. Starting from a state-of-the-art pretrained model, we tackle the problem from two different perspectives: global and local explanation. With global explanation, we analyze the model behavior by looking at entire classes of data, showing which regions of the input repetitive patterns have the most influence for a specific outcome of the model. Our explanation results align with the expectations of clinical experts, showing that features crucial for AF detection contribute heavily to the final decision. These features include R-R interval regularity, absence of the P-wave or presence of electrical activity in the isoelectric period. On the other hand, with local explanation, we analyze specific input signals and model outcomes. We present a comprehensive analysis of the network facing different conditions, whether the model has correctly classified the input signal or not. This enables a deeper understanding of the network's behavior, showing the most informative regions that trigger the classification decision and highlighting possible causes of misbehavior.

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Year:  2021        PMID: 33617456      PMCID: PMC8513820          DOI: 10.1109/JBHI.2021.3060997

Source DB:  PubMed          Journal:  IEEE J Biomed Health Inform        ISSN: 2168-2194            Impact factor:   7.021


  20 in total

1.  Long data from the electrocardiogram.

Authors:  Giorgio Quer; Evan D Muse; Eric J Topol; Steven R Steinhubl
Journal:  Lancet       Date:  2019-06-01       Impact factor: 79.321

2.  Development and Validation of a Deep Learning Algorithm for Detection of Diabetic Retinopathy in Retinal Fundus Photographs.

Authors:  Varun Gulshan; Lily Peng; Marc Coram; Martin C Stumpe; Derek Wu; Arunachalam Narayanaswamy; Subhashini Venugopalan; Kasumi Widner; Tom Madams; Jorge Cuadros; Ramasamy Kim; Rajiv Raman; Philip C Nelson; Jessica L Mega; Dale R Webster
Journal:  JAMA       Date:  2016-12-13       Impact factor: 56.272

Review 3.  Screening for Atrial Fibrillation: A Report of the AF-SCREEN International Collaboration.

Authors:  Ben Freedman; John Camm; Hugh Calkins; Jeffrey S Healey; Mårten Rosenqvist; Jiguang Wang; Christine M Albert; Craig S Anderson; Sotiris Antoniou; Emelia J Benjamin; Giuseppe Boriani; Johannes Brachmann; Axel Brandes; Tze-Fan Chao; David Conen; Johan Engdahl; Laurent Fauchier; David A Fitzmaurice; Leif Friberg; Bernard J Gersh; David J Gladstone; Taya V Glotzer; Kylie Gwynne; Graeme J Hankey; Joseph Harbison; Graham S Hillis; Mellanie T Hills; Hooman Kamel; Paulus Kirchhof; Peter R Kowey; Derk Krieger; Vivian W Y Lee; Lars-Åke Levin; Gregory Y H Lip; Trudie Lobban; Nicole Lowres; Georges H Mairesse; Carlos Martinez; Lis Neubeck; Jessica Orchard; Jonathan P Piccini; Katrina Poppe; Tatjana S Potpara; Helmut Puererfellner; Michiel Rienstra; Roopinder K Sandhu; Renate B Schnabel; Chung-Wah Siu; Steven Steinhubl; Jesper H Svendsen; Emma Svennberg; Sakis Themistoclakis; Robert G Tieleman; Mintu P Turakhia; Arnljot Tveit; Steven B Uittenbogaart; Isabelle C Van Gelder; Atul Verma; Rolf Wachter; Bryan P Yan
Journal:  Circulation       Date:  2017-05-09       Impact factor: 29.690

4.  An artificial intelligence-enabled ECG algorithm for the identification of patients with atrial fibrillation during sinus rhythm: a retrospective analysis of outcome prediction.

Authors:  Zachi I Attia; Peter A Noseworthy; Francisco Lopez-Jimenez; Samuel J Asirvatham; Abhishek J Deshmukh; Bernard J Gersh; Rickey E Carter; Xiaoxi Yao; Alejandro A Rabinstein; Brad J Erickson; Suraj Kapa; Paul A Friedman
Journal:  Lancet       Date:  2019-08-01       Impact factor: 79.321

5.  Wearable sensor data and self-reported symptoms for COVID-19 detection.

Authors:  Giorgio Quer; Jennifer M Radin; Matteo Gadaleta; Katie Baca-Motes; Lauren Ariniello; Edward Ramos; Vik Kheterpal; Eric J Topol; Steven R Steinhubl
Journal:  Nat Med       Date:  2020-10-29       Impact factor: 53.440

6.  AF Classification from a Short Single Lead ECG Recording: the PhysioNet/Computing in Cardiology Challenge 2017.

Authors:  Gari D Clifford; Chengyu Liu; Benjamin Moody; Li-Wei H Lehman; Ikaro Silva; Qiao Li; A E Johnson; Roger G Mark
Journal:  Comput Cardiol (2010)       Date:  2018-04-05

7.  Effect of a Home-Based Wearable Continuous ECG Monitoring Patch on Detection of Undiagnosed Atrial Fibrillation: The mSToPS Randomized Clinical Trial.

Authors:  Steven R Steinhubl; Jill Waalen; Alison M Edwards; Lauren M Ariniello; Rajesh R Mehta; Gail S Ebner; Chureen Carter; Katie Baca-Motes; Elise Felicione; Troy Sarich; Eric J Topol
Journal:  JAMA       Date:  2018-07-10       Impact factor: 56.272

8.  Cardiologist-level arrhythmia detection and classification in ambulatory electrocardiograms using a deep neural network.

Authors:  Awni Y Hannun; Pranav Rajpurkar; Masoumeh Haghpanahi; Geoffrey H Tison; Codie Bourn; Mintu P Turakhia; Andrew Y Ng
Journal:  Nat Med       Date:  2019-01-07       Impact factor: 53.440

Review 9.  Machine Learning and the Future of Cardiovascular Care: JACC State-of-the-Art Review.

Authors:  Giorgio Quer; Ramy Arnaout; Michael Henne; Rima Arnaout
Journal:  J Am Coll Cardiol       Date:  2021-01-26       Impact factor: 24.094

10.  Screening for atrial fibrillation: predicted sensitivity of short, intermittent electrocardiogram recordings in an asymptomatic at-risk population.

Authors:  Giorgio Quer; Ben Freedman; Steven R Steinhubl
Journal:  Europace       Date:  2020-12-23       Impact factor: 5.214

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  2 in total

1.  The Prediction of Preterm Birth Using Time-Series Technology-Based Machine Learning: Retrospective Cohort Study.

Authors:  Yichao Zhang; Sha Lu; Yina Wu; Wensheng Hu; Zhenming Yuan
Journal:  JMIR Med Inform       Date:  2022-06-13

Review 2.  State-of-the-Art Deep Learning Methods on Electrocardiogram Data: Systematic Review.

Authors:  Georgios Petmezas; Leandros Stefanopoulos; Vassilis Kilintzis; Andreas Tzavelis; John A Rogers; Aggelos K Katsaggelos; Nicos Maglaveras
Journal:  JMIR Med Inform       Date:  2022-08-15
  2 in total

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