Literature DB >> 33617001

High-dimensional integrative copula discriminant analysis for multiomics data.

Yong He1, Hao Chen2, Hao Sun2, Jiadong Ji1, Yufeng Shi1,2, Xinsheng Zhang3, Lei Liu4.   

Abstract

Multiomics or integrative omics data have been increasingly common in biomedical studies, holding a promise in better understanding human health and disease. In this article, we propose an integrative copula discrimination analysis classifier in the context of two-class classification, which relaxes the common Gaussian assumption and gains power by borrowing information from multiple omics data types in discriminant analysis. Numerical studies are conducted to assess the finite sample performance of the new classifier. We apply our model to the Religious Orders Study and Memory and Aging Project (ROSMAP) Study, integrating gene expression and DNA methylation data for better prediction.
© 2020 John Wiley & Sons, Ltd.

Entities:  

Keywords:  Gaussian copula; data mining; discriminant analysis; integrative analysis; machine learning

Mesh:

Year:  2020        PMID: 33617001      PMCID: PMC8211381          DOI: 10.1002/sim.8758

Source DB:  PubMed          Journal:  Stat Med        ISSN: 0277-6715            Impact factor:   2.373


  27 in total

1.  A ROAD to Classification in High Dimensional Space.

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Journal:  J R Stat Soc Series B Stat Methodol       Date:  2012-04-12       Impact factor: 4.488

2.  Overview and findings from the religious orders study.

Authors:  David A Bennett; Julie A Schneider; Zoe Arvanitakis; Robert S Wilson
Journal:  Curr Alzheimer Res       Date:  2012-07       Impact factor: 3.498

3.  Overview and findings from the rush Memory and Aging Project.

Authors:  David A Bennett; Julie A Schneider; Aron S Buchman; Lisa L Barnes; Patricia A Boyle; Robert S Wilson
Journal:  Curr Alzheimer Res       Date:  2012-07       Impact factor: 3.498

Review 4.  General overview on the merits of multimodal neuroimaging data fusion.

Authors:  Kâmil Uludağ; Alard Roebroeck
Journal:  Neuroimage       Date:  2014-05-16       Impact factor: 6.556

5.  MetaKTSP: a meta-analytic top scoring pair method for robust cross-study validation of omics prediction analysis.

Authors:  SungHwan Kim; Chien-Wei Lin; George C Tseng
Journal:  Bioinformatics       Date:  2016-03-02       Impact factor: 6.937

6.  Improved centroids estimation for the nearest shrunken centroid classifier.

Authors:  Sijian Wang; Ji Zhu
Journal:  Bioinformatics       Date:  2007-03-24       Impact factor: 6.937

7.  Integrative analysis of methylation and transcriptional profiles to predict aging and construct aging specific cross-tissue networks.

Authors:  Yin Wang; Tao Huang; Lu Xie; Lei Liu
Journal:  BMC Syst Biol       Date:  2016-12-23

8.  Integrative analysis of DNA methylation and gene expression identified cervical cancer-specific diagnostic biomarkers.

Authors:  Wanxue Xu; Mengyao Xu; Longlong Wang; Wei Zhou; Rong Xiang; Yi Shi; Yunshan Zhang; Yongjun Piao
Journal:  Signal Transduct Target Ther       Date:  2019-12-13

9.  A Machine Learning Method for Identifying Critical Interactions Between Gene Pairs in Alzheimer's Disease Prediction.

Authors:  Hao Chen; Yong He; Jiadong Ji; Yufeng Shi
Journal:  Front Neurol       Date:  2019-10-31       Impact factor: 4.003

10.  Association of the interleukin 1 beta gene and brain spontaneous activity in amnestic mild cognitive impairment.

Authors:  Liying Zhuang; Xiaoyan Liu; Xiaohui Xu; Chunxian Yue; Hao Shu; Feng Bai; Hui Yu; Yongmei Shi; Zhijun Zhang
Journal:  J Neuroinflammation       Date:  2012-12-01       Impact factor: 8.322

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  1 in total

1.  Simultaneous differential network analysis and classification for matrix-variate data with application to brain connectivity.

Authors:  Hao Chen; Ying Guo; Yong He; Jiadong Ji; Lei Liu; Yufeng Shi; Yikai Wang; Long Yu; Xinsheng Zhang
Journal:  Biostatistics       Date:  2022-07-18       Impact factor: 5.279

  1 in total

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