Literature DB >> 33612859

Harnessing fluctuation theorems to discover free energy and dissipation potentials from non-equilibrium data.

Shenglin Huang1, Chuanpeng Sun1, Prashant K Purohit1, Celia Reina1.   

Abstract

The Jarzynski relation, as an equality form of the second law of thermodynamics, represents an exact thermodynamic statement that is valid arbitrarily far away from equilibrium. This remarkable relation directly links the equilibrium free energy difference between two states and the probability distribution of the work done along a process that drives the system from one state to the other. Here, we leverage the Jarzynski equality and a local equilibrium assumption, to go beyond the calculation of free energy differences and also extract the dissipation potential from additional measurements of kinematic field variables (strain and velocity fields). The proposed strategy is exemplified over pulling experiments of mass-spring models obeying overdamped Langevin dynamics, which is a prototype for nanorods, fibrous macro-molecules and the Rouse model of polymers. Different interaction potentials, fluid viscosities and bath temperatures are studied, so as to intrinsically control how close or far away the system is from equilibrium. The data-inferred continuum models are then validated against processes governed by different pulling protocols, thereby demonstrating their predictive capability. The methods presented here represent a first step toward full material characterization from non-equilibrium data of macroscopic observables, which could potentially be obtained from experimental observations.

Entities:  

Keywords:  Dissipation; Jarzynski Equality; Statistical Mechanics; Thermodynamics

Year:  2021        PMID: 33612859      PMCID: PMC7894616          DOI: 10.1016/j.jmps.2021.104323

Source DB:  PubMed          Journal:  J Mech Phys Solids        ISSN: 0022-5096            Impact factor:   5.471


  14 in total

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Authors:  G E Crooks
Journal:  Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics       Date:  1999-09

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Authors:  Jeff Gore; Felix Ritort; Carlos Bustamante
Journal:  Proc Natl Acad Sci U S A       Date:  2003-10-03       Impact factor: 11.205

3.  Distribution of work in isothermal nonequilibrium processes.

Authors:  Thomas Speck; Udo Seifert
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2004-12-06

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Authors:  Christopher Jarzynski
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2006-04-05

5.  Diffusion equation for energy in ergodic adiabatic ensembles.

Authors: 
Journal:  Phys Rev A       Date:  1992-12-15       Impact factor: 3.140

6.  Combined molecular/continuum modeling reveals the role of friction during fast unfolding of coiled-coil proteins.

Authors:  Alejandro Torres-Sánchez; Juan M Vanegas; Prashant K Purohit; Marino Arroyo
Journal:  Soft Matter       Date:  2019-06-19       Impact factor: 3.679

Review 7.  Stochastic thermodynamics, fluctuation theorems and molecular machines.

Authors:  Udo Seifert
Journal:  Rep Prog Phys       Date:  2012-11-20

8.  Thermodynamics of prediction.

Authors:  Susanne Still; David A Sivak; Anthony J Bell; Gavin E Crooks
Journal:  Phys Rev Lett       Date:  2012-09-19       Impact factor: 9.161

9.  Stick-slip kinetics in a bistable bar immersed in a heat bath.

Authors:  Chuanpeng Sun; Prashant K Purohit
Journal:  Int J Solids Struct       Date:  2019-07-31       Impact factor: 3.900

10.  Sequential sampling strategy for extreme event statistics in nonlinear dynamical systems.

Authors:  Mustafa A Mohamad; Themistoklis P Sapsis
Journal:  Proc Natl Acad Sci U S A       Date:  2018-10-16       Impact factor: 11.205

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