| Literature DB >> 33608381 |
Deep Pandya1, Myra Shah2, Fuat Kaplan1, Candice Martino1, Gillian Levy3, Mia Kazanjian4,5, Stephen Batter5, John Martignetti1, Richard C Frank1,2.
Abstract
Neuroendocrine prostate cancer (NEPC) is a highly aggressive histologic subtype of prostate cancer associated with a poor prognosis. Its incidence is expected to increase as castration-resistant disease emerges from the widespread use of potent androgen receptor-targeting therapies, such as abiraterone and enzalutamide. Defects in homologous recombination repair genes, such as BRCA1/2, are also being increasingly detected in individuals with advanced prostate cancer. We present the case of a 65-yr-old man with a germline BRCA2 mutation who developed explosive treatment-emergent, small-cell neuroendocrine prostate cancer. He achieved a complete response to platinum-containing chemotherapy, but a limited remission duration with the use of olaparib, a poly(ADP-ribose) polymerase (PARP) inhibitor, as maintenance therapy. Upon relapse, tumor genomic profiling revealed a novel 228-bp deletion in exon 11 of the BRCA2 gene. The addition of the anti-PD1 drug pembrolizumab to olaparib was ineffective. This case highlights the ongoing challenges in treating neuroendocrine prostate cancer, even in the setting of homologous recombination repair deficiency.Entities:
Keywords: prostate cancer
Year: 2021 PMID: 33608381 PMCID: PMC7903888 DOI: 10.1101/mcs.a005801
Source DB: PubMed Journal: Cold Spring Harb Mol Case Stud ISSN: 2373-2873
Figure 1.(A) Prostate adenocarcinoma: low-power view from left lateral mid prostate biopsy showing Gleason 4 + 4 = 8 pattern (4×). (B) Prostatic specific acid phosphatase (PSAP): low-power view from left lateral mid prostate biopsy showing positive cytoplasmic staining for PSAP by immunohistochemistry (IHC) (10×). (C) Liver small-cell carcinoma: low-power view of tumor in the liver with nests and sheets of uniform tumor cells with high nuclear to cytoplasmic ratio (10×). (D) Liver synaptophysin: IHC for synaptophysin showing membranous and cytoplasmic positive staining (20×).
Figure 2.Clinical pattern of response to treatment. PSA and Chromogranin A measurement levels corresponding to the timeline showing therapy (middle panel). Top panels show corresponding axial CT images. N.B. Leuprolide continued but abiraterone was discontinued upon diagnosis of neuroendocrine carcinoma. (Pembro) Pembrolizumab.
Germline (g) and somatic (s) mutations
| Gene symbol | Chromosome_position_change | Clinical significance | Variation type | Gene region | Protein variant | Allele frequency (%) | Impact on translation | dbSNP ID | ||
|---|---|---|---|---|---|---|---|---|---|---|
| Pre-platin/PARPi | Relapse during PARPi | |||||||||
| Color panel (g) | Guardant360 (g,s) | MSK-IMPACT (s) | ||||||||
| Saliva | Blood (cfDNA) | Tumor | ||||||||
| Chr 13:32340000_C > A/C > T | Pathogenic | SNV | Exonic | p.S1882* | 49.3 | 46.9 | - | Stop-gained | 80358785 | |
| Chr 11: 108192129_T > C | VUS | SNV | Exonic | p.I2185T | 51.9 | 44.3 | - | Missense | 779611511 | |
| Chr 17:43094766_C > T | VUS | SNV | Exonic | p.E255D | ND | 6.9 | 39.6 | Missense | 62625299 | |
| Chr 13:32339783_G>227del | Reversion | Indel | Exonic | p.V1810_C1885del | ND | ND | 56 | In-frame | ||
| Chr 2_29275099_C > G | Benign | SNV | Exonic | p.V681L | - | NR | 42 | Missense | ||
| Chr 3_47057420_G > C | Likely pathogenic | SNV | Exonic | p.R2122G | - | NR | 39.9 | Missense | 1279854337 | |
| Chr 7_81757271_G > A | Benign | SNV | Exonic | p.R134C | - | NR | 60.7 | Missense | 1032300573 | |
Germline origin of BRCA2 p.S1882* was determined by color hereditary cancer risk test. Guardant360 cannot distinguish germline from somatic origin.
MSK-IMPACT calls mutations against paired germline samples and does not report germline variants.
(ND) Not detected, (-) not determined, (NR) not reported (although sequenced, Guarant360 final report does not include variants of these genes), (SNV) single-nucleotide variant, (Indel) insertion deletion.
Somatic alterations—copy-number alterations (CNAs) and structural variants (SVs)
| Gene symbol | Type | Alteration | Location | Fold change | Panel |
|---|---|---|---|---|---|
| Whole gene | Deletion | 10q23.31 | −3.2 | MSK-IMPACT | |
| Whole gene | Loss | 1p36.32 | −1.8 | ||
| Whole gene | Loss | 12q24.31 | −1.7 | ||
| Whole gene | Loss | 1p36.22 | −1.8 | ||
| Whole gene | Loss | 2q37.3 | −1.7 | ||
| Whole gene | Loss | 12q23.31 | −1.7 | ||
| Translocation | t(14;15)(q31.2;q22.31) (Chr 14:g.84540589::Chr 15:g.66679738) | exon 1 | |||
| Deletion | c.56-537:TMPRSS2_c.18 + 8757:ERGdel | TMPRSS2 exon 1 to ERG exon 2 | |||
| Deletion | c.9453 + 378_c.11536del | Exons 41–44 |
Amplification is considered when there is a greater than twofold change detected and deletion when <−2 of fold change is detected.
Figure 3.Detection of case patient BRCA2 germline and somatic mutations in different tissue compartments. (A) BRCA2 domains showing location of patient's germline and somatic mutations. The patient has a germline mutation S1882*, which is a pathogenic nonsense mutation. During PARPi (olaparib) treatment, a somatic deletion mutation (V1810_C1885del) of 76 aa was detected. To confirm reversion status of the deletion mutant, Sanger and qPCR (B) were performed. As shown in B, gel electrophoresis (left) from the PCR performed on the primers designed outside the deleted region showed two clear bands of 230 bp and 458 bp and Sanger sequencing (right) on each of these bands confirmed the somatic deletion mutation but also showed two peaks, for the wild-type and germline point mutation. To further confirm these findings, we designed a TaqMan genotyping assay for the point mutation and performed qPCR (C). qPCR on gDNA showed the wild-type and point mutation alleles at 30 and 32 cycles, respectively. qPCR performed on PARPi resistant tumor tissue also detected both alleles.