Literature DB >> 33607885

Uncertainty estimation for molecular dynamics and sampling.

Giulio Imbalzano1, Yongbin Zhuang2, Venkat Kapil1, Kevin Rossi1, Edgar A Engel1, Federico Grasselli1, Michele Ceriotti1.   

Abstract

Machine-learning models have emerged as a very effective strategy to sidestep time-consuming electronic-structure calculations, enabling accurate simulations of greater size, time scale, and complexity. Given the interpolative nature of these models, the reliability of predictions depends on the position in phase space, and it is crucial to obtain an estimate of the error that derives from the finite number of reference structures included during model training. When using a machine-learning potential to sample a finite-temperature ensemble, the uncertainty on individual configurations translates into an error on thermodynamic averages and leads to a loss of accuracy when the simulation enters a previously unexplored region. Here, we discuss how uncertainty quantification can be used, together with a baseline energy model, or a more robust but less accurate interatomic potential, to obtain more resilient simulations and to support active-learning strategies. Furthermore, we introduce an on-the-fly reweighing scheme that makes it possible to estimate the uncertainty in thermodynamic averages extracted from long trajectories. We present examples covering different types of structural and thermodynamic properties and systems as diverse as water and liquid gallium.

Entities:  

Year:  2021        PMID: 33607885     DOI: 10.1063/5.0036522

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  6 in total

1.  Gaussian Process Regression for Materials and Molecules.

Authors:  Volker L Deringer; Albert P Bartók; Noam Bernstein; David M Wilkins; Michele Ceriotti; Gábor Csányi
Journal:  Chem Rev       Date:  2021-08-16       Impact factor: 60.622

2.  Machine learning potentials for complex aqueous systems made simple.

Authors:  Christoph Schran; Fabian L Thiemann; Patrick Rowe; Erich A Müller; Ondrej Marsalek; Angelos Michaelides
Journal:  Proc Natl Acad Sci U S A       Date:  2021-09-21       Impact factor: 11.205

3.  Local Kernel Regression and Neural Network Approaches to the Conformational Landscapes of Oligopeptides.

Authors:  Raimon Fabregat; Alberto Fabrizio; Edgar A Engel; Benjamin Meyer; Veronika Juraskova; Michele Ceriotti; Clemence Corminboeuf
Journal:  J Chem Theory Comput       Date:  2022-02-18       Impact factor: 6.006

4.  Simulations of molecular photodynamics in long timescales.

Authors:  Saikat Mukherjee; Max Pinheiro; Baptiste Demoulin; Mario Barbatti
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2022-03-28       Impact factor: 4.226

5.  A complete description of thermodynamic stabilities of molecular crystals.

Authors:  Venkat Kapil; Edgar A Engel
Journal:  Proc Natl Acad Sci U S A       Date:  2022-02-08       Impact factor: 11.205

6.  A Machine Learning Model of Chemical Shifts for Chemically and Structurally Diverse Molecular Solids.

Authors:  Manuel Cordova; Edgar A Engel; Artur Stefaniuk; Federico Paruzzo; Albert Hofstetter; Michele Ceriotti; Lyndon Emsley
Journal:  J Phys Chem C Nanomater Interfaces       Date:  2022-09-23       Impact factor: 4.177

  6 in total

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