Literature DB >> 33606980

DNA origami signposts for identifying proteins on cell membranes by electron cryotomography.

Emma Silvester1, Benjamin Vollmer2, Vojtěch Pražák2, Daven Vasishtan2, Emily A Machala3, Catheryne Whittle3, Susan Black2, Jonathan Bath4, Andrew J Turberfield5, Kay Grünewald6, Lindsay A Baker7.   

Abstract

Electron cryotomography (cryoET), an electron cryomicroscopy (cryoEM) modality, has changed our understanding of biological function by revealing the native molecular details of membranes, viruses, and cells. However, identification of individual molecules within tomograms from cryoET is challenging because of sample crowding and low signal-to-noise ratios. Here, we present a tagging strategy for cryoET that precisely identifies individual protein complexes in tomograms without relying on metal clusters. Our method makes use of DNA origami to produce "molecular signposts" that target molecules of interest, here via fluorescent fusion proteins, providing a platform generally applicable to biological surfaces. We demonstrate the specificity of signpost origami tags (SPOTs) in vitro as well as their suitability for cryoET of membrane vesicles, enveloped viruses, and the exterior of intact mammalian cells.
Copyright © 2021 The Authors. Published by Elsevier Inc. All rights reserved.

Entities:  

Keywords:  DNA origami; aptamers; cellular electron cryotomography; cryoEM; electron cryomicroscopy; labeling; molecular arrows; protein localisation; signpost origami tags; tagging

Mesh:

Substances:

Year:  2021        PMID: 33606980      PMCID: PMC7895908          DOI: 10.1016/j.cell.2021.01.033

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  88 in total

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2.  Model for the architecture of caveolae based on a flexible, net-like assembly of Cavin1 and Caveolin discs.

Authors:  Miriam Stoeber; Pascale Schellenberger; C Alistair Siebert; Cedric Leyrat; Ari Helenius; Kay Grünewald
Journal:  Proc Natl Acad Sci U S A       Date:  2016-11-10       Impact factor: 11.205

3.  An atomic model of HIV-1 capsid-SP1 reveals structures regulating assembly and maturation.

Authors:  Florian K M Schur; Martin Obr; Wim J H Hagen; William Wan; Arjen J Jakobi; Joanna M Kirkpatrick; Carsten Sachse; Hans-Georg Kräusslich; John A G Briggs
Journal:  Science       Date:  2016-07-14       Impact factor: 47.728

4.  Three-Dimensional Structural Characterization of HIV-1 Tethered to Human Cells.

Authors:  Joshua D Strauss; Jason E Hammonds; Hong Yi; Lingmei Ding; Paul Spearman; Elizabeth R Wright
Journal:  J Virol       Date:  2015-11-18       Impact factor: 5.103

5.  RNA aptamer binding to polyhistidine-tag.

Authors:  Shoutaro Tsuji; Taku Tanaka; Naomi Hirabayashi; Shintaro Kato; Joe Akitomi; Hazuki Egashira; Iwao Waga; Takashi Ohtsu
Journal:  Biochem Biophys Res Commun       Date:  2009-06-09       Impact factor: 3.575

6.  The regulatory complex of Drosophila melanogaster 26S proteasomes. Subunit composition and localization of a deubiquitylating enzyme.

Authors:  H Hölzl; B Kapelari; J Kellermann; E Seemüller; M Sümegi; A Udvardy; O Medalia; J Sperling; S A Müller; A Engel; W Baumeister
Journal:  J Cell Biol       Date:  2000-07-10       Impact factor: 10.539

7.  The structure of herpesvirus fusion glycoprotein B-bilayer complex reveals the protein-membrane and lateral protein-protein interaction.

Authors:  Ulrike E Maurer; Tzviya Zeev-Ben-Mordehai; Arun Prasad Pandurangan; Tina M Cairns; Brian P Hannah; J Charles Whitbeck; Roselyn J Eisenberg; Gary H Cohen; Maya Topf; Juha T Huiskonen; Kay Grünewald
Journal:  Structure       Date:  2013-07-11       Impact factor: 5.006

8.  Two distinct trimeric conformations of natively membrane-anchored full-length herpes simplex virus 1 glycoprotein B.

Authors:  Tzviya Zeev-Ben-Mordehai; Daven Vasishtan; Anna Hernández Durán; Benjamin Vollmer; Paul White; Arun Prasad Pandurangan; C Alistair Siebert; Maya Topf; Kay Grünewald
Journal:  Proc Natl Acad Sci U S A       Date:  2016-03-24       Impact factor: 11.205

9.  In situ structural analysis of Golgi intracisternal protein arrays.

Authors:  Benjamin D Engel; Miroslava Schaffer; Sahradha Albert; Shoh Asano; Jürgen M Plitzko; Wolfgang Baumeister
Journal:  Proc Natl Acad Sci U S A       Date:  2015-08-26       Impact factor: 11.205

10.  Native structure of a retroviral envelope protein and its conformational change upon interaction with the target cell.

Authors:  Christiane Riedel; Daven Vasishtan; C Alistair Siebert; Cathy Whittle; Maik J Lehmann; Walther Mothes; Kay Grünewald
Journal:  J Struct Biol       Date:  2016-06-23       Impact factor: 2.867

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  4 in total

Review 1.  Label-free visual proteomics: Coupling MS- and EM-based approaches in structural biology.

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Journal:  Mol Cell       Date:  2022-01-20       Impact factor: 17.970

Review 2.  Pharmaceutical applications of framework nucleic acids.

Authors:  Liang Chen; Jie Zhang; Zhun Lin; Ziyan Zhang; Miao Mao; Jiacheng Wu; Qian Li; Yuanqing Zhang; Chunhai Fan
Journal:  Acta Pharm Sin B       Date:  2021-05-26       Impact factor: 11.413

Review 3.  Amphiphilic DNA nanostructures for bottom-up synthetic biology.

Authors:  Roger Rubio-Sánchez; Giacomo Fabrini; Pietro Cicuta; Lorenzo Di Michele
Journal:  Chem Commun (Camb)       Date:  2021-11-30       Impact factor: 6.222

4.  Multiple Wavelength Photopolymerization of Stable Poly(Catecholamines)-DNA Origami Nanostructures.

Authors:  Pia Winterwerber; Colette J Whitfield; David Y W Ng; Tanja Weil
Journal:  Angew Chem Int Ed Engl       Date:  2022-01-03       Impact factor: 16.823

  4 in total

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