Literature DB >> 33602993

HLA diversity in the Argentinian Umbilical Cord Blood Bank: frequencies according to donor's reported ancestry and geographical distribution.

Daniela Fernández Souto1, Julieta Rosello1, Laura Lazo1, Florencia Veloso1, Cecilia Gamba1, Silvina Kuperman1, Valeria Roca2,3.   

Abstract

Umbilical cord blood (UCB) is a suitable source for hematopoietic stem cell transplantation. The study of HLA genes by next generation sequencing is commonly used in transplants. Donor/patient HLA matching is often higher within groups of common ancestry, however "Hispanic" is a broad category that fails to represent Argentina's complex genetic admixture. Our aim is to describe HLA diversity of banked UCB units collected across the country taking into consideration donor's reported ancestral origins as well as geographic distribution. Our results showed an evenly distribution of units mainly for 2 groups: of European and of Native American descent, each associated to a defined geographic location pattern (Central vs. North regions). We observed differences in allele frequency distributions for some alleles previously described in Amerindian populations: for Class I (A*68:17, A*02:11:01G, A*02:22:01G, B*39:05:01, B*35:21, B*40:04, B*15:04:01G, B*35:04:01, B*51:13:01) and Class II (DRB1*04:11:01, DRB1*04:07:01G/03, DRB1*08:02:01, DRB1*08:07, DRB1*09:01:02G, DRB1*14:02:01, DRB1*16:02:01G). Our database expands the current knowledge of HLA diversity in Argentinian population. Although further studies are necessary to fully comprehend HLA heterogeneity, this report should prove useful to increase the possibility of finding compatible donors for successful allogeneic transplant and to improve recruitment strategies for UCB donors across the country.

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Year:  2021        PMID: 33602993      PMCID: PMC7892815          DOI: 10.1038/s41598-021-83282-1

Source DB:  PubMed          Journal:  Sci Rep        ISSN: 2045-2322            Impact factor:   4.379


  36 in total

1.  Peptide specificity of the Amerindian B*3905 allotype: molecular insight into selection mechanisms driving HLA class I evolution in indigenous populations of the Americas.

Authors:  J Yagüe; M Ramos; S Ogueta; J Vázquez; J A López de Castro
Journal:  Tissue Antigens       Date:  2000-11

2.  HLA class I diversity in Kolla Amerindians.

Authors:  A M Little; I Scott; S Pesoa; S G Marsh; R Argüello; S T Cox; D Ramon; C Vullo; J A Madrigal
Journal:  Hum Immunol       Date:  2001-02       Impact factor: 2.850

3.  HLA Haplotypes In 250 Families: The Baylor Laboratory Results And A Perspective On A Core NGS Testing Model For The 17th International HLA And Immunogenetics Workshop.

Authors:  Medhat Askar; Abeer Madbouly; Leah Zhrebker; Amanda Willis; Shawna Kennedy; Karin Padros; Maria Beatriz Rodriguez; Christian Bach; Bernd Spriewald; Reem Ameen; Salem Al Shemmari; Katerina Tarassi; Alexandra Tsirogianni; Nayera Hamdy; Ghada Mossallam; Gideon Hönger; Regina Spinnler; Gottfried Fischer; Ingrid Fae; Ronald Charlton; Arthur Dunk; Tamara A Vayntrub; Michael Halagan; Kazutoyo Osoegawa; Marcelo Fernández-Viña
Journal:  Hum Immunol       Date:  2019-09-23       Impact factor: 2.850

4.  HLA-A, -B, -C, -DRB1 and -DQB1 allele and haplotype frequencies of 1463 umbilical cord blood units typed in high resolution from Bogotá, Colombia.

Authors:  Iván Aurelio Páez-Gutiérrez; David Guillermo Hernández-Mejía; Diana Vanegas; Bernardo Camacho-Rodríguez; Ana María Perdomo-Arciniegas
Journal:  Hum Immunol       Date:  2019-03-09       Impact factor: 2.850

5.  High-resolution characterization of allelic and haplotypic HLA frequency distribution in a Spanish population using high-throughput next-generation sequencing.

Authors:  Gonzalo Montero-Martín; Kalyan C Mallempati; Sridevi Gangavarapu; Francisco Sánchez-Gordo; Maria J Herrero-Mata; Antonio Balas; Jose L Vicario; Florentino Sánchez-García; Maria F González-Escribano; Manuel Muro; Maria R Moya-Quiles; Rafael González-Fernández; Javier G Ocejo-Vinyals; Luis Marín; Lisa E Creary; Kazutoyo Osoegawa; Tamara Vayntrub; Jose L Caro-Oleas; Carlos Vilches; Dolores Planelles; Marcelo A Fernández-Viña
Journal:  Hum Immunol       Date:  2019-02-11       Impact factor: 2.850

6.  Differences in HLA class II alleles of isolated South American Indian populations from Brazil and Argentina.

Authors:  M Cerna; M Falco; H Friedman; E Raimondi; A Maccagno; M Fernandez-Viña; P Stastny
Journal:  Hum Immunol       Date:  1993-08       Impact factor: 2.850

7.  Next-generation sequencing reveals new information about HLA allele and haplotype diversity in a large European American population.

Authors:  Lisa E Creary; Sridevi Gangavarapu; Kalyan C Mallempati; Gonzalo Montero-Martín; Stacy J Caillier; Adam Santaniello; Jill A Hollenbach; Jorge R Oksenberg; Marcelo A Fernández-Viña
Journal:  Hum Immunol       Date:  2019-07-22       Impact factor: 2.850

Review 8.  The impact of HLA genotyping on survival following unrelated donor haematopoietic stem cell transplantation.

Authors:  Bronwen E Shaw; Rafael Arguello; Christian A Garcia-Sepulveda; J Alejandro Madrigal
Journal:  Br J Haematol       Date:  2010-06-15       Impact factor: 6.998

9.  High-resolution molecular characterization of the HLA class I and class II in the Tarahumara Amerindian population.

Authors:  J E García-Ortiz; L Sandoval-Ramírez; H Rangel-Villalobos; H Maldonado-Torres; S Cox; C A García-Sepúlveda; L E Figuera; S G E Marsh; A M Little; J A Madrigal; J Moscoso; A Arnaiz-Villena; J R Argüello
Journal:  Tissue Antigens       Date:  2006-08

10.  HLA alleles and haplotypes observed in 263 US families.

Authors:  Kazutoyo Osoegawa; Kalyan C Mallempati; Sridevi Gangavarapu; Arisa Oki; Ketevan Gendzekhadze; Susana R Marino; Nicholas K Brown; Maria P Bettinotti; Eric T Weimer; Gonzalo Montero-Martín; Lisa E Creary; Tamara A Vayntrub; Chia-Jung Chang; Medhat Askar; Steven J Mack; Marcelo A Fernández-Viña
Journal:  Hum Immunol       Date:  2019-06-27       Impact factor: 2.850

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