Literature DB >> 33600438

Zebrafish Ski7 tunes RNA levels during the oocyte-to-embryo transition.

Luis Enrique Cabrera-Quio1, Alexander Schleiffer1, Karl Mechtler2, Andrea Pauli1.   

Abstract

Post-transcriptional regulation of gene expression is crucial during the oocyte-to-embryo transition, a highly dynamic process characterized by the absence of nuclear transcription. Thus, changes to the RNA content are solely dependent on RNA degradation. Although several mechanisms that promote RNA decay during embryogenesis have been identified, it remains unclear which machineries contribute to remodeling the maternal transcriptome. Here, we focused on the degradation factor Ski7 in zebrafish. Homozygous ski7 mutant fish had higher proportions of both poor quality eggs and eggs that were unable to develop beyond the one-cell stage. Consistent with the idea that Ski7 participates in remodeling the maternal RNA content, transcriptome profiling identified hundreds of misregulated mRNAs in the absence of Ski7. Furthermore, upregulated genes were generally lowly expressed in wild type, suggesting that Ski7 maintains low transcript levels for this subset of genes. Finally, GO enrichment and proteomic analyses of misregulated factors implicated Ski7 in the regulation of redox processes. This was confirmed experimentally by an increased resistance of ski7 mutant embryos to reductive stress. Our results provide first insights into the physiological role of vertebrate Ski7 as a post-transcriptional regulator during the oocyte-to-embryo transition.

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Year:  2021        PMID: 33600438      PMCID: PMC7924785          DOI: 10.1371/journal.pgen.1009390

Source DB:  PubMed          Journal:  PLoS Genet        ISSN: 1553-7390            Impact factor:   5.917


  87 in total

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Journal:  EMBO J       Date:  2010-06-08       Impact factor: 11.598

3.  Codon adaptation index as a measure of dominating codon bias.

Authors:  A Carbone; A Zinovyev; F Képès
Journal:  Bioinformatics       Date:  2003-11-01       Impact factor: 6.937

Review 4.  The maternal-zygotic transition: death and birth of RNAs.

Authors:  Alexander F Schier
Journal:  Science       Date:  2007-04-20       Impact factor: 47.728

5.  apQuant: Accurate Label-Free Quantification by Quality Filtering.

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Journal:  J Proteome Res       Date:  2018-11-02       Impact factor: 4.466

6.  Helicase-Dependent RNA Decay Illuminated by a Cryo-EM Structure of a Human Nuclear RNA Exosome-MTR4 Complex.

Authors:  Eva-Maria Weick; M Rhyan Puno; Kurt Januszyk; John C Zinder; Michael A DiMattia; Christopher D Lima
Journal:  Cell       Date:  2018-06-14       Impact factor: 41.582

7.  Nicotinamide Mononucleotide Supplementation Reverses the Declining Quality of Maternally Aged Oocytes.

Authors:  Yilong Miao; Zhaokang Cui; Qian Gao; Rong Rui; Bo Xiong
Journal:  Cell Rep       Date:  2020-08-04       Impact factor: 9.423

8.  HTSeq--a Python framework to work with high-throughput sequencing data.

Authors:  Simon Anders; Paul Theodor Pyl; Wolfgang Huber
Journal:  Bioinformatics       Date:  2014-09-25       Impact factor: 6.937

9.  Scrambled eggs: Proteomic portraits and novel biomarkers of egg quality in zebrafish (Danio rerio).

Authors:  Ozlem Yilmaz; Amélie Patinote; Thao Vi Nguyen; Emmanuelle Com; Regis Lavigne; Charles Pineau; Craig V Sullivan; Julien Bobe
Journal:  PLoS One       Date:  2017-11-16       Impact factor: 3.240

Review 10.  Protecting the proteome: Eukaryotic cotranslational quality control pathways.

Authors:  Jens Lykke-Andersen; Eric J Bennett
Journal:  J Cell Biol       Date:  2014-02-17       Impact factor: 10.539

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  2 in total

1.  Stage Specific Transcriptomic Analysis and Database for Zebrafish Oogenesis.

Authors:  Yoel Bogoch; Allison Jamieson-Lucy; Charles E Vejnar; Karine Levy; Antonio J Giraldez; Mary C Mullins; Yaniv M Elkouby
Journal:  Front Cell Dev Biol       Date:  2022-06-06

2.  RNA degradation is required for the germ-cell to maternal transition in Drosophila.

Authors:  Patrick Blatt; Siu Wah Wong-Deyrup; Alicia McCarthy; Shane Breznak; Matthew D Hurton; Maitreyi Upadhyay; Benjamin Bennink; Justin Camacho; Miler T Lee; Prashanth Rangan
Journal:  Curr Biol       Date:  2021-05-13       Impact factor: 10.834

  2 in total

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