Literature DB >> 33600411

Ten simple rules for navigating the computational aspect of an interdisciplinary PhD.

Sabrina Islam1, Christine A Wells1.   

Abstract

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Year:  2021        PMID： 33600411      PMCID： PMC7891742          DOI： 10.1371/journal.pcbi.1008554

Source DB:  PubMed          Journal:  PLoS Comput Biol        ISSN： 1553-734X            Impact factor:   4.475


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  16 in total

Review 1.  "Essentially, all models are wrong, but some are useful"-a cross-disciplinary agenda for building useful models in cell biology and biophysics.

Authors:  Julien Berro
Journal:  Biophys Rev       Date:  2018-11-12

2.  MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms.

Authors:  Sudhir Kumar; Glen Stecher; Michael Li; Christina Knyaz; Koichiro Tamura
Journal:  Mol Biol Evol       Date:  2018-06-01       Impact factor: 16.240

3.  Ten simple rules for getting help from online scientific communities.

Authors:  Giovanni M Dall'Olio; Jacopo Marino; Michael Schubert; Kevin L Keys; Melanie I Stefan; Colin S Gillespie; Pierre Poulain; Khader Shameer; Robert Sugar; Brandon M Invergo; Lars J Jensen; Jaume Bertranpetit; Hafid Laayouni
Journal:  PLoS Comput Biol       Date:  2011-09-29       Impact factor: 4.475

4.  Ten Simple Rules for a Computational Biologist's Laboratory Notebook.

Authors:  Santiago Schnell
Journal:  PLoS Comput Biol       Date:  2015-09-10       Impact factor: 4.475

5.  Ten simple rules for biologists learning to program.

Authors:  Maureen A Carey; Jason A Papin
Journal:  PLoS Comput Biol       Date:  2018-01-04       Impact factor: 4.475

6.  Propagation of errors in citation networks: a study involving the entire citation network of a widely cited paper published in, and later retracted from, the journal Nature.

Authors:  Paul E van der Vet; Harm Nijveen
Journal:  Res Integr Peer Rev       Date:  2016-05-03

7.  Stemformatics: visualize and download curated stem cell data.

Authors:  Jarny Choi; Chris M Pacheco; Rowland Mosbergen; Othmar Korn; Tyrone Chen; Isha Nagpal; Steve Englart; Paul W Angel; Christine A Wells
Journal:  Nucleic Acids Res       Date:  2019-01-08       Impact factor: 16.971

8.  Ten simple rules for writing and sharing computational analyses in Jupyter Notebooks.

Authors:  Adam Rule; Amanda Birmingham; Cristal Zuniga; Ilkay Altintas; Shih-Cheng Huang; Rob Knight; Niema Moshiri; Mai H Nguyen; Sara Brin Rosenthal; Fernando Pérez; Peter W Rose
Journal:  PLoS Comput Biol       Date:  2019-07-25       Impact factor: 4.475

9.  Ten simple rules for a good poster presentation.

Authors:  Thomas C Erren; Philip E Bourne
Journal:  PLoS Comput Biol       Date:  2007-05       Impact factor: 4.475

10.  The FAIR Guiding Principles for scientific data management and stewardship.

Authors:  Mark D Wilkinson; Michel Dumontier; I Jsbrand Jan Aalbersberg; Gabrielle Appleton; Myles Axton; Arie Baak; Niklas Blomberg; Jan-Willem Boiten; Luiz Bonino da Silva Santos; Philip E Bourne; Jildau Bouwman; Anthony J Brookes; Tim Clark; Mercè Crosas; Ingrid Dillo; Olivier Dumon; Scott Edmunds; Chris T Evelo; Richard Finkers; Alejandra Gonzalez-Beltran; Alasdair J G Gray; Paul Groth; Carole Goble; Jeffrey S Grethe; Jaap Heringa; Peter A C 't Hoen; Rob Hooft; Tobias Kuhn; Ruben Kok; Joost Kok; Scott J Lusher; Maryann E Martone; Albert Mons; Abel L Packer; Bengt Persson; Philippe Rocca-Serra; Marco Roos; Rene van Schaik; Susanna-Assunta Sansone; Erik Schultes; Thierry Sengstag; Ted Slater; George Strawn; Morris A Swertz; Mark Thompson; Johan van der Lei; Erik van Mulligen; Jan Velterop; Andra Waagmeester; Peter Wittenburg; Katherine Wolstencroft; Jun Zhao; Barend Mons
Journal:  Sci Data       Date:  2016-03-15       Impact factor: 6.444
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