Literature DB >> 33597547

Genome sequences reveal global dispersal routes and suggest convergent genetic adaptations in seahorse evolution.

Chunyan Li1,2,3, Melisa Olave4,5, Yali Hou6,7, Geng Qin1,2, Ralf F Schneider4,8, Zexia Gao9, Xiaolong Tu10, Xin Wang1, Furong Qi6,7, Alexander Nater4, Andreas F Kautt4,11, Shiming Wan1, Yanhong Zhang1, Yali Liu1, Huixian Zhang1, Bo Zhang1, Hao Zhang1, Meng Qu1, Shuaishuai Liu1, Zeyu Chen7,12, Jia Zhong1, He Zhang13, Lingfeng Meng13, Kai Wang14, Jianping Yin1, Liangmin Huang1,7, Byrappa Venkatesh15, Axel Meyer16, Xuemei Lu17, Qiang Lin18,19,20,21.   

Abstract

Seahorses have a circum-global distribution in tropical to temperate coastal waters. Yet, seahorses show many adaptations for a sedentary, cryptic lifestyle: they require specific habitats, such as seagrass, kelp or coral reefs, lack pelvic and caudal fins, and give birth to directly developed offspring without pronounced pelagic larval stage, rendering long-range dispersal by conventional means inefficient. Here we investigate seahorses' worldwide dispersal and biogeographic patterns based on a de novo genome assembly of Hippocampus erectus as well as 358 re-sequenced genomes from 21 species. Seahorses evolved in the late Oligocene and subsequent circum-global colonization routes are identified and linked to changing dynamics in ocean currents and paleo-temporal seaway openings. Furthermore, the genetic basis of the recurring "bony spines" adaptive phenotype is linked to independent substitutions in a key developmental gene. Analyses thus suggest that rafting via ocean currents compensates for poor dispersal and rapid adaptation facilitates colonizing new habitats.

Entities:  

Year:  2021        PMID: 33597547     DOI: 10.1038/s41467-021-21379-x

Source DB:  PubMed          Journal:  Nat Commun        ISSN: 2041-1723            Impact factor:   14.919


  61 in total

1.  Male pregnancy in seahorses and pipefishes (family Syngnathidae): rapid diversification of paternal brood pouch morphology inferred from a molecular phylogeny.

Authors:  A B Wilson; A Vincent; I Ahnesjö; A Meyer
Journal:  J Hered       Date:  2001 Mar-Apr       Impact factor: 2.645

2.  Global patterns and predictors of marine biodiversity across taxa.

Authors:  Derek P Tittensor; Camilo Mora; Walter Jetz; Heike K Lotze; Daniel Ricard; Edward Vanden Berghe; Boris Worm
Journal:  Nature       Date:  2010-07-28       Impact factor: 49.962

3.  Rafting seahorses: the presence of juvenile Hippocampus patagonicus in floating debris.

Authors:  D C Luzzatto; M L Estalles; J M Díaz de Astarloa
Journal:  J Fish Biol       Date:  2013-07-31       Impact factor: 2.051

Review 4.  Hopping hotspots: global shifts in marine biodiversity.

Authors:  W Renema; D R Bellwood; J C Braga; K Bromfield; R Hall; K G Johnson; P Lunt; C P Meyer; L B McMonagle; R J Morley; A O'Dea; J A Todd; F P Wesselingh; M E J Wilson; J M Pandolfi
Journal:  Science       Date:  2008-08-01       Impact factor: 47.728

5.  Marine speciation on a small planet.

Authors:  S R Palumbi
Journal:  Trends Ecol Evol       Date:  1992-04       Impact factor: 17.712

6.  BIOMECHANICS. Why the seahorse tail is square.

Authors:  Michael M Porter; Dominique Adriaens; Ross L Hatton; Marc A Meyers; Joanna McKittrick
Journal:  Science       Date:  2015-07-02       Impact factor: 47.728

7.  Tethyan changes shaped aquatic diversification.

Authors:  Zhonge Hou; Shuqiang Li
Journal:  Biol Rev Camb Philos Soc       Date:  2017-10-12

8.  An adaptive explanation for the horse-like shape of seahorses.

Authors:  Sam Van Wassenbergh; Gert Roos; Lara Ferry
Journal:  Nat Commun       Date:  2011-01-25       Impact factor: 14.919

9.  The seahorse genome and the evolution of its specialized morphology.

Authors:  Qiang Lin; Shaohua Fan; Yanhong Zhang; Meng Xu; Huixian Zhang; Yulan Yang; Alison P Lee; Joost M Woltering; Vydianathan Ravi; Helen M Gunter; Wei Luo; Zexia Gao; Zhi Wei Lim; Geng Qin; Ralf F Schneider; Xin Wang; Peiwen Xiong; Gang Li; Kai Wang; Jiumeng Min; Chi Zhang; Ying Qiu; Jie Bai; Weiming He; Chao Bian; Xinhui Zhang; Dai Shan; Hongyue Qu; Ying Sun; Qiang Gao; Liangmin Huang; Qiong Shi; Axel Meyer; Byrappa Venkatesh
Journal:  Nature       Date:  2016-12-14       Impact factor: 49.962

10.  Biological evidence supports an early and complex emergence of the Isthmus of Panama.

Authors:  Christine D Bacon; Daniele Silvestro; Carlos Jaramillo; Brian Tilston Smith; Prosanta Chakrabarty; Alexandre Antonelli
Journal:  Proc Natl Acad Sci U S A       Date:  2015-04-27       Impact factor: 11.205

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  6 in total

Review 1.  Cenozoic Tethyan changes dominated Eurasian animal evolution and diversity patterns.

Authors:  Zhe Zhao; Zhong-E Hou; Shu-Qiang Li
Journal:  Zool Res       Date:  2022-01-18

2.  A highly contiguous nuclear genome assembly of the mandarinfish Synchiropus splendidus (Syngnathiformes: Callionymidae).

Authors:  Martin Stervander; William A Cresko
Journal:  G3 (Bethesda)       Date:  2021-12-08       Impact factor: 3.154

3.  Genome of the estuarine oyster provides insights into climate impact and adaptive plasticity.

Authors:  Ao Li; He Dai; Ximing Guo; Ziyan Zhang; Kexin Zhang; Chaogang Wang; Xinxing Wang; Wei Wang; Hongju Chen; Xumin Li; Hongkun Zheng; Li Li; Guofan Zhang
Journal:  Commun Biol       Date:  2021-11-12

4.  Phylogenomic analysis of Syngnathidae reveals novel relationships, origins of endemic diversity and variable diversification rates.

Authors:  Josefin Stiller; Graham Short; Healy Hamilton; Norah Saarman; Sarah Longo; Peter Wainwright; Greg W Rouse; W Brian Simison
Journal:  BMC Biol       Date:  2022-03-27       Impact factor: 7.431

5.  Leafy and weedy seadragon genomes connect genic and repetitive DNA features to the extravagant biology of syngnathid fishes.

Authors:  Clayton M Small; Hope M Healey; Mark C Currey; Emily A Beck; Julian Catchen; Angela S P Lin; William A Cresko; Susan Bassham
Journal:  Proc Natl Acad Sci U S A       Date:  2022-06-22       Impact factor: 12.779

6.  Genome and gene evolution of seahorse species revealed by the chromosome-level genome of Hippocampus abdominalis.

Authors:  Libin He; Xin Long; Jianfei Qi; Zongji Wang; Zhen Huang; Shuiqing Wu; Xingtan Zhang; Huiyu Luo; Xinxin Chen; Jinbo Lin; Qiuhua Yang; Shiyu Huang; Qi Zhou; Leyun Zheng
Journal:  Mol Ecol Resour       Date:  2021-11-07       Impact factor: 8.678

  6 in total

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