Literature DB >> 33596902

Exit strategies: optimising feasible surveillance for detection, elimination, and ongoing prevention of COVID-19 community transmission.

K Lokuge1, E Banks2, S Davis2, L Roberts2, T Street2, D O'Donovan2, G Caleo2, K Glass2.   

Abstract

BACKGROUND: Following implementation of strong containment measures, several countries and regions have low detectable community transmission of COVID-19. We developed an efficient, rapid, and scalable surveillance strategy to detect remaining COVID-19 community cases through exhaustive identification of every active transmission chain. We identified measures to enable early detection and effective management of any reintroduction of transmission once containment measures are lifted to ensure strong containment measures do not require reinstatement.
METHODS: We compared efficiency and sensitivity to detect community transmission chains through testing of the following: hospital cases; fever, cough and/or ARI testing at community/primary care; and asymptomatic testing; using surveillance evaluation methods and mathematical modelling, varying testing capacities, reproductive number (R) and weekly cumulative incidence of COVID-19 and non-COVID-19 respiratory symptoms using data from Australia. We assessed system requirements to identify all transmission chains and follow up all cases and primary contacts within each chain, per million population.
RESULTS: Assuming 20% of cases are asymptomatic and 30% of symptomatic COVID-19 cases present for testing, with R = 2.2, a median of 14 unrecognised community cases (8 infectious) occur when a transmission chain is identified through hospital surveillance versus 7 unrecognised cases (4 infectious) through community-based surveillance. The 7 unrecognised community upstream cases are estimated to generate a further 55-77 primary contacts requiring follow-up. The unrecognised community cases rise to 10 if 50% of cases are asymptomatic. Screening asymptomatic community members cannot exhaustively identify all cases under any of the scenarios assessed. The most important determinant of testing requirements for symptomatic screening is levels of non-COVID-19 respiratory illness. If 4% of the community have respiratory symptoms, and 1% of those with symptoms have COVID-19, exhaustive symptomatic screening requires approximately 11,600 tests/million population using 1/4 pooling, with 98% of cases detected (2% missed), given 99.9% sensitivity. Even with a drop in sensitivity to 70%, pooling was more effective at detecting cases than individual testing under all scenarios examined.
CONCLUSIONS: Screening all acute respiratory disease in the community, in combination with exhaustive and meticulous case and contact identification and management, enables appropriate early detection and elimination of COVID-19 community transmission. An important component is identification, testing, and management of all contacts, including upstream contacts (i.e. potential sources of infection for identified cases, and their related transmission chains). Pooling allows increased case detection when testing capacity is limited, even given reduced test sensitivity. Critical to the effectiveness of all aspects of surveillance is appropriate community engagement, messaging to optimise testing uptake and compliance with other measures.

Entities:  

Keywords:  COVID-19; Community transmission chains; Detection; Modelling; Primary care; Surveillance; Syndromic fever; Testing

Year:  2021        PMID: 33596902     DOI: 10.1186/s12916-021-01934-5

Source DB:  PubMed          Journal:  BMC Med        ISSN: 1741-7015            Impact factor:   8.775


  1 in total

1.  COVID-19 epidemic in Switzerland: on the importance of testing, contact tracing and isolation.

Authors:  Marcel Salathé; Christian L Althaus; Richard Neher; Silvia Stringhini; Emma Hodcroft; Jacques Fellay; Marcel Zwahlen; Gabriela Senti; Manuel Battegay; Annelies Wilder-Smith; Isabella Eckerle; Matthias Egger; Nicola Low
Journal:  Swiss Med Wkly       Date:  2020-03-19       Impact factor: 2.193

  1 in total
  10 in total

1.  Acute respiratory infection symptoms and COVID-19 testing behaviour: results based on South Australian health surveys.

Authors:  S Joshi; K D'Onise; R Nolan; S Davis; K Glass; K Lokuge
Journal:  BMC Public Health       Date:  2021-12-20       Impact factor: 3.295

2.  Aggressive containment, suppression, and mitigation of covid-19: lessons learnt from eight countries.

Authors:  Shishi Wu; Rachel Neill; Chuan De Foo; Alvin Qijia Chua; Anne-Sophie Jung; Victoria Haldane; Salma M Abdalla; Wei-Jie Guan; Sudhvir Singh; Anders Nordström; Helena Legido-Quigley
Journal:  BMJ       Date:  2021-11-28

Review 3.  When do children avoid infection risks: Lessons for schools during the COVID-19 pandemic.

Authors:  Nina H Fefferman; Katy-Ann Blacker; Charles A Price; Vanessa LoBue
Journal:  iScience       Date:  2022-02-26

4.  Simulating Transmission Scenarios of the Delta Variant of SARS-CoV-2 in Australia.

Authors:  Sheryl L Chang; Oliver M Cliff; Cameron Zachreson; Mikhail Prokopenko
Journal:  Front Public Health       Date:  2022-02-24

5.  Opening up safely: public health system requirements for ongoing COVID-19 management based on evaluation of Australia's surveillance system performance.

Authors:  Kamalini Lokuge; Katina D'Onise; Emily Banks; Tatum Street; Sydney Jantos; Mohana Baptista; Kathryn Glass
Journal:  BMC Med       Date:  2022-04-15       Impact factor: 8.775

6.  Modelling SARS-CoV-2 disease progression in Australia and New Zealand: an account of an agent-based approach to support public health decision-making.

Authors:  Jason Thompson; Rod McClure; Tony Blakely; Nick Wilson; Michael G Baker; Jasper S Wijnands; Thiago Herick De Sa; Kerry Nice; Camilo Cruz; Mark Stevenson
Journal:  Aust N Z J Public Health       Date:  2022-03-03       Impact factor: 3.755

7.  Maximizing the Efficiency of Active Case Finding for SARS-CoV-2 Using Bandit Algorithms.

Authors:  Gregg S Gonsalves; J Tyler Copple; A David Paltiel; Eli P Fenichel; Jude Bayham; Mark Abraham; David Kline; Sam Malloy; Michael F Rayo; Net Zhang; Daria Faulkner; Dane A Morey; Frank Wu; Thomas Thornhill; Suzan Iloglu; Joshua L Warren
Journal:  Med Decis Making       Date:  2021-06-14       Impact factor: 2.749

8.  Clinical Evaluation of a New Antigen-Based COVID-19 Rapid Diagnostic Test from Symptomatic Patients.

Authors:  Saiful Arefeen Sazed; Mohammad Golam Kibria; Mohammad Sharif Hossain; Md Fahad Zamil; Pranob Chandra Adhikary; Mohammad Enayet Hossain; Dilruba Ahmed; Rashidul Haque; Mohammad Shafiul Alam
Journal:  Diagnostics (Basel)       Date:  2021-12-08

9.  Comparison of Rapid Nucleic Acid Extraction Methods for SARS-CoV-2 Detection by RT-qPCR.

Authors:  Lívia Mara Silva; Lorena Rodrigues Riani; Marcelo Silva Silvério; Olavo Dos Santos Pereira-Júnior; Frederico Pittella
Journal:  Diagnostics (Basel)       Date:  2022-02-27

Review 10.  Exit strategies from lockdowns due to COVID-19: a scoping review.

Authors:  Madhavi Misra; Harsha Joshi; Rakesh Sarwal; Krishna D Rao
Journal:  BMC Public Health       Date:  2022-03-12       Impact factor: 3.295

  10 in total

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