Literature DB >> 33594100

Genetic characteristics of Bursaphelenchus xylophilus third-stage dispersal juveniles.

Qiaoli Chen1,2, Ruizhi Zhang1, Danlei Li1,2, Feng Wang3,4.   

Abstract

The third-stage dispersal juvenile (DJ3) of pinewood nematode (PWN) is highly associated with low-temperature survival and spread of the nematode. Oil-Red-O staining showed that its lipid content was significantly higher compared with other PWN stages. Weighted gene coexpression network analysis identified that genes in the pink module were highly related to DJ3 induced in the laboratory (DJ3-lab). These genes were arranged according to their gene significance (GS) to DJ3-lab. Of the top 30 genes with the highest GS, seven were found to be highly homologous to the cysteine protease family cathepsin 1 (CATH1). The top 30 genes with the highest weight value to each of the seven genes in the pink module were selected, and finally 35 genes were obtained. Between these seven CATH1 homologous genes and their 35 highly related genes, 15 were related to fat metabolism or autophagy. These autophagy-related genes were also found to be highly correlated with other genes in the pink module, suggesting that autophagy might be involved in the mechanism of longevity in DJ3 and the formation of DJ3 by regulating genes related to fat metabolism.

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Year:  2021        PMID: 33594100      PMCID: PMC7887269          DOI: 10.1038/s41598-021-82343-9

Source DB:  PubMed          Journal:  Sci Rep        ISSN: 2045-2322            Impact factor:   4.379


  34 in total

1.  Gene ontology: tool for the unification of biology. The Gene Ontology Consortium.

Authors:  M Ashburner; C A Ball; J A Blake; D Botstein; H Butler; J M Cherry; A P Davis; K Dolinski; S S Dwight; J T Eppig; M A Harris; D P Hill; L Issel-Tarver; A Kasarskis; S Lewis; J C Matese; J E Richardson; M Ringwald; G M Rubin; G Sherlock
Journal:  Nat Genet       Date:  2000-05       Impact factor: 38.330

2.  The dauerlarva, a post-embryonic developmental variant of the nematode Caenorhabditis elegans.

Authors:  R C Cassada; R L Russell
Journal:  Dev Biol       Date:  1975-10       Impact factor: 3.582

3.  Cytoscape: a software environment for integrated models of biomolecular interaction networks.

Authors:  Paul Shannon; Andrew Markiel; Owen Ozier; Nitin S Baliga; Jonathan T Wang; Daniel Ramage; Nada Amin; Benno Schwikowski; Trey Ideker
Journal:  Genome Res       Date:  2003-11       Impact factor: 9.043

4.  Autophagy regulates ageing in C. elegans.

Authors:  Eszter S Hars; Haiyan Qi; Alexey G Ryazanov; Shengkan Jin; Li Cai; Chengcheng Hu; Leroy F Liu
Journal:  Autophagy       Date:  2007-03-30       Impact factor: 16.016

5.  Coordination of mitophagy and mitochondrial biogenesis during ageing in C. elegans.

Authors:  Konstantinos Palikaras; Eirini Lionaki; Nektarios Tavernarakis
Journal:  Nature       Date:  2015-04-20       Impact factor: 49.962

Review 6.  Bursaphelenchus xylophilus: opportunities in comparative genomics and molecular host-parasite interactions.

Authors:  John T Jones; Maurice Moens; Manuel Mota; Hongmei Li; Taisei Kikuchi
Journal:  Mol Plant Pathol       Date:  2008-05       Impact factor: 5.663

7.  RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome.

Authors:  Bo Li; Colin N Dewey
Journal:  BMC Bioinformatics       Date:  2011-08-04       Impact factor: 3.307

8.  Stage-specific transcriptome of Bursaphelenchus xylophilus reveals temporal regulation of effector genes and roles of the dauer-like stages in the lifecycle.

Authors:  Suguru E Tanaka; Mehmet Dayi; Yasunobu Maeda; Isheng J Tsai; Ryusei Tanaka; Mark Bligh; Yuko Takeuchi-Kaneko; Kenji Fukuda; Natsumi Kanzaki; Taisei Kikuchi
Journal:  Sci Rep       Date:  2019-04-15       Impact factor: 4.379

9.  Identification and characterization of a Bursaphelenchus xylophilus (Aphelenchida: Aphelenchoididae) thermotolerance-Related Gene: Bx-HSP90.

Authors:  Feng Wang; Zhiying Wang; Danlei Li; Qiaoli Chen
Journal:  Int J Mol Sci       Date:  2012-07-16       Impact factor: 6.208

Review 10.  Autophagy and Longevity.

Authors:  Shuhei Nakamura; Tamotsu Yoshimori
Journal:  Mol Cells       Date:  2018-01-23       Impact factor: 5.034

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