Literature DB >> 33594057

Positioning of nucleosomes containing γ-H2AX precedes active DNA demethylation and transcription initiation.

Stephanie Dobersch1,2,3, Karla Rubio1,2,4,5, Indrabahadur Singh2,6, Stefan Günther7,8, Johannes Graumann9, Julio Cordero10,11, Rafael Castillo-Negrete1,2, Minh Bao Huynh12, Aditi Mehta2,13, Peter Braubach14,15, Hector Cabrera-Fuentes16,17,18,19, Jürgen Bernhagen20,21, Cho-Ming Chao22,23,24,25, Saverio Bellusci22,23,24,25, Andreas Günther24,25,26,27, Klaus T Preissner16,24, Sita Kugel3, Gergana Dobreva10,11, Malgorzata Wygrecka24,25,28, Thomas Braun8,24, Dulce Papy-Garcia12, Guillermo Barreto29,30,31,32,33,34.   

Abstract

In addition to nucleosomes, chromatin contains non-histone chromatin-associated proteins, of which the high-mobility group proteins are the most abundant. Chromatin-mediated regulation of transcription involves DNA methylation and histone modifications. However, the order of events and the precise function of high-mobility group proteins during transcription initiation remain unclear. Here we show that high-mobility group AT-hook 2 protein (HMGA2) induces DNA nicks at the transcription start site, which are required by the histone chaperone FACT complex to incorporate nucleosomes containing the histone variant H2A.X. Further, phosphorylation of H2A.X at S139 (γ-H2AX) is required for repair-mediated DNA demethylation and transcription activation. The relevance of these findings is demonstrated within the context of TGFB1 signaling and idiopathic pulmonary fibrosis, suggesting therapies against this lethal disease. Our data support the concept that chromatin opening during transcriptional initiation involves intermediates with DNA breaks that subsequently require DNA repair mechanisms to ensure genome integrity.

Entities:  

Year:  2021        PMID: 33594057     DOI: 10.1038/s41467-021-21227-y

Source DB:  PubMed          Journal:  Nat Commun        ISSN: 2041-1723            Impact factor:   14.919


  63 in total

Review 1.  Regulation of Reprogramming and Cellular Plasticity through Histone Exchange and Histone Variant Incorporation.

Authors:  Xavier Gaume; Maria-Elena Torres-Padilla
Journal:  Cold Spring Harb Symp Quant Biol       Date:  2015-11-18

2.  High mobility group protein-mediated transcription requires DNA damage marker γ-H2AX.

Authors:  Indrabahadur Singh; Nihan Ozturk; Julio Cordero; Aditi Mehta; Diya Hasan; Claudia Cosentino; Carlos Sebastian; Marcus Krüger; Mario Looso; Gianni Carraro; Saverio Bellusci; Werner Seeger; Thomas Braun; Raul Mostoslavsky; Guillermo Barreto
Journal:  Cell Res       Date:  2015-06-05       Impact factor: 25.617

3.  High basal γH2AX levels sustain self-renewal of mouse embryonic and induced pluripotent stem cells.

Authors:  Valentina Turinetto; Luca Orlando; Yolanda Sanchez-Ripoll; Benjamin Kumpfmueller; Michael P Storm; Paola Porcedda; Valentina Minieri; Silvia Saviozzi; Lisa Accomasso; Elisa Cibrario Rocchietti; Kim Moorwood; Paola Circosta; Alessandro Cignetti; Melanie J Welham; Claudia Giachino
Journal:  Stem Cells       Date:  2012-07       Impact factor: 6.277

4.  DNA double-stranded breaks induce histone H2AX phosphorylation on serine 139.

Authors:  E P Rogakou; D R Pilch; A H Orr; V S Ivanova; W M Bonner
Journal:  J Biol Chem       Date:  1998-03-06       Impact factor: 5.157

5.  Distribution of p53 binding protein 1 (53BP1) and phosphorylated H2A.X during mouse preimplantation development in the absence of DNA damage.

Authors:  Céline Ziegler-Birling; Anne Helmrich; Làszlò Tora; Maria-Elena Torres-Padilla
Journal:  Int J Dev Biol       Date:  2009       Impact factor: 2.203

6.  Recent developments in the use of γ-H2AX as a quantitative DNA double-strand break biomarker.

Authors:  Christophe E Redon; Asako J Nakamura; Olga A Martin; Palak R Parekh; Urbain S Weyemi; William M Bonner
Journal:  Aging (Albany NY)       Date:  2011-02       Impact factor: 5.682

Review 7.  HMGA proteins as modulators of chromatin structure during transcriptional activation.

Authors:  Nihan Ozturk; Indrabahadur Singh; Aditi Mehta; Thomas Braun; Guillermo Barreto
Journal:  Front Cell Dev Biol       Date:  2014-03-06

8.  The ataxia telangiectasia mutated kinase controls Igκ allelic exclusion by inhibiting secondary Vκ-to-Jκ rearrangements.

Authors:  Natalie C Steinel; Baeck-Seung Lee; Anthony T Tubbs; Jeffrey J Bednarski; Emily Schulte; Katherine S Yang-Iott; David G Schatz; Barry P Sleckman; Craig H Bassing
Journal:  J Exp Med       Date:  2013-02-04       Impact factor: 14.307

Review 9.  Histone H2A variants in nucleosomes and chromatin: more or less stable?

Authors:  Clemens Bönisch; Sandra B Hake
Journal:  Nucleic Acids Res       Date:  2012-09-21       Impact factor: 16.971

10.  High-resolution dynamic mapping of histone-DNA interactions in a nucleosome.

Authors:  Michael A Hall; Alla Shundrovsky; Lu Bai; Robert M Fulbright; John T Lis; Michelle D Wang
Journal:  Nat Struct Mol Biol       Date:  2009-01-11       Impact factor: 15.369

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  7 in total

Review 1.  Lymphoid-specific helicase in epigenetics, DNA repair and cancer.

Authors:  Xiangyu Chen; Yamei Li; Karla Rubio; Bi Deng; Yuyi Li; Qinwei Tang; Chao Mao; Shuang Liu; Desheng Xiao; Guillermo Barreto; Yongguang Tao
Journal:  Br J Cancer       Date:  2021-09-07       Impact factor: 9.075

2.  R-Loop Immunoprecipitation: A Method to Detect R-Loop Interacting Factors.

Authors:  Chiara Beghè; Natalia Gromak
Journal:  Methods Mol Biol       Date:  2022

Review 3.  Histone Variants in the Specialization of Plant Chromatin.

Authors:  Maryam Foroozani; Dylan H Holder; Roger B Deal
Journal:  Annu Rev Plant Biol       Date:  2022-02-15       Impact factor: 28.310

Review 4.  Idiopathic Pulmonary Fibrosis: An Update on Pathogenesis.

Authors:  Qianru Mei; Zhe Liu; He Zuo; Zhenhua Yang; Jing Qu
Journal:  Front Pharmacol       Date:  2022-01-19       Impact factor: 5.810

Review 5.  Epigenetic Regulation in Exposome-Induced Tumorigenesis: Emerging Roles of ncRNAs.

Authors:  Miguel Ángel Olmedo-Suárez; Ivonne Ramírez-Díaz; Andrea Pérez-González; Alejandro Molina-Herrera; Miguel Ángel Coral-García; Sagrario Lobato; Pouya Sarvari; Guillermo Barreto; Karla Rubio
Journal:  Biomolecules       Date:  2022-03-28

Review 6.  Impact of the Exposome on the Epigenome in Inflammatory Bowel Disease Patients and Animal Models.

Authors:  Sophie Vieujean; Bénédicte Caron; Vincent Haghnejad; Jean-Yves Jouzeau; Patrick Netter; Anne-Charlotte Heba; Ndeye Coumba Ndiaye; David Moulin; Guillermo Barreto; Silvio Danese; Laurent Peyrin-Biroulet
Journal:  Int J Mol Sci       Date:  2022-07-09       Impact factor: 6.208

7.  Hmga2 deficiency is associated with allometric growth retardation, infertility, and behavioral abnormalities in mice.

Authors:  Mi Ok Lee; Jingyi Li; Brian W Davis; Srijana Upadhyay; Hadil M Al Muhisen; Larry J Suva; Tracy M Clement; Leif Andersson
Journal:  G3 (Bethesda)       Date:  2022-02-04       Impact factor: 3.542

  7 in total

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