| Literature DB >> 33591573 |
Ye Li1, En-Qing You2, Wen-Hong Lin1, Xiao-Ning Liu1, De-Pei Shen1, Xin-Li Zhang1, Dong-Chun Ma1, Hong-Miao Li1.
Abstract
BACKGROUND: The aim of our study was to estimate the association of ficolin-1 (FCN1) gene (rs10120023, rs1071583) and ficolin-3 (FCN3) gene (rs3813800, rs10794501) polymorphisms and pulmonary tuberculosis (PTB) susceptibility, as well as their several clinical features, in a Chinese population.Entities:
Keywords: zzm321990FCN1zzm321990; zzm321990FCN3zzm321990; genetic polymorphisms; pulmonary tuberculosis
Year: 2021 PMID: 33591573 PMCID: PMC8059754 DOI: 10.1002/jcla.23732
Source DB: PubMed Journal: J Clin Lab Anal ISSN: 0887-8013 Impact factor: 2.352
The main demographic and clinical characteristics of study subjects
| Characteristics | PTB ( | Controls ( |
|---|---|---|
| Demographic characteristics | ||
| Age (years) | 44.94 ± 17.78 | 43.41 ± 12.96 |
| Sex (male/female) | 317/172 | 224/265 |
| Clinical characteristics | ||
| Fever (+/−) | 86/393 | NA |
| Drug resistance (+/−) | 75/406 | NA |
| DILI (+/−) | 70/413 | NA |
| Pulmonary infection (+/−) | 105/378 | NA |
| Hypoproteinemia (+/−) | 34/449 | NA |
| Leukopenia (+/−) | 33/450 | NA |
PTB, pulmonary tuberculosis; NA: not applicable; +/−:with/without.
These data were described as mean ± standard deviation.
part of the study subjects of data missing.
Genotypes and alleles frequencies of FCN1 and FCN3 in PTB patients and healthy controls
| SNP | Analyze model | PTB | Controls |
|
| |
|---|---|---|---|---|---|---|
| rs10120023 | Genotypes | TT | 9 (1.84) | 3 (0.61) | 0.104 | 0.34 (0.09,1.25) |
| CT | 108 (22.09) | 117 (23.92) | 0.563 | 1.09 (0.81,1.47) | ||
| CC | 372 (76.07) | 369 (75.46) | Reference | |||
| Alleles | T | 126 (12.88) | 123 (12.58) | 0.839 | 0.97 (0.75,1.27) | |
| C | 852 (87.12) | 855 (87.42) | Reference | |||
| Dominant model | CC | 372 (76.07) | 369 (75.46) | 0.823 | 0.97 (0.72,1.30) | |
| CT+TT | 117 (23.93) | 120 (24.54) | Reference | |||
| Recessive model | TT | 9 (1.84) | 3 (0.61) | 0.097 | 0.33 (0.09,1.22) | |
| CT+CC | 480 (98.16) | 486 (99.39) | Reference | |||
| rs1071583 | Genotypes | TT | 111 (22.70) | 103 (21.06) | 0.357 | 0.84 (0.58,1.21) |
| TC | 261 (53.37) | 257 (52.56) | 0.466 | 0.89 (0.66,1.21) | ||
| CC | 117 (23.93) | 129 (26.38) | Reference | |||
| Alleles | T | 483 (49.39) | 463 (47.34) | 0.366 | 0.92 (0.77,1.10) | |
| C | 495 (50.61) | 515 (52.66) | Reference | |||
| Dominant model | CC | 117 (23.93) | 129 (26.38) | 0.377 | 1.14 (0.85,1.52) | |
| CT+TT | 372 (76.07) | 360 (73.82) | Reference | |||
| Recessive model | TT | 111 (22.70) | 103 (21.06) | 0.536 | 0.91 (0.67,1.23) | |
| CT+CC | 378 (77.30) | 386 (78.94) | Reference | |||
| rs3813800 | Genotypes | CC | 9 (1.84) | 9 (1.84) | 0.959 | 0.98 (0.38,2.49) |
| GC | 118 (24.13) | 109 (22.29) | 0.494 | 0.90 (0.67,1.21) | ||
| GG | 362 (74.03) | 371 (75.87) | Reference | |||
| Alleles | C | 136 (13.91) | 127 (12.99) | 0.551 | 0.92 (0.71,1.20) | |
| G | 842 (86.09) | 851 (87.01) | Reference | |||
| Dominant model | GG | 362 (74.03) | 371 (75.87) | 0.507 | 1.10 (0.83,1.47) | |
| CC+GC | 127 (25.97) | 118 (24,13) | Reference | |||
| Recessive model | CC | 9 (1.84) | 9 (1.84) | 1.000 | 1.00 (0.39,2.54) | |
| GC+GG | 480 (98.16) | 480 (98.16) | Reference | |||
| rs10794501 | Genotypes | AA | 4 (0.82) | 10 (2.04) | 0.125 | 2.49 (0.78,8.02) |
| AT | 105 (21.47) | 98 (20.04) | 0.650 | 0.93 (0.68,1.27) | ||
| TT | 380 (77.71) | 381 (77.92) | Reference | |||
| Alleles | A | 113 (11.55) | 118 (12.07) | 0.726 | 1.05 (0.80,1.38) | |
| T | 865 (88.45) | 860 (87.93) | Reference | |||
| Dominant model | TT | 380 (77.71) | 381 (77.91) | 0.939 | 1.01 (0.75,1.37) | |
| AA+AT | 109 (22.29) | 108 (22.09) | Reference | |||
| Recessive model | AA | 4 (0.82) | 10 (2.04) | 0.119 | 2.53 (0.79,8.13) | |
| TT+AT | 485 (99.18) | 479 (97.96) | Reference | |||
SNP, single nucleotide polymorphism; PTB, pulmonary tuberculosis; OR, odds ratio; CI, confidence interval; logistic regression analyses were used for statistical analysis.
p < 0.05 was considered as the level of significance.
The associations between FCN1 and FCN3 genes polymorphisms and clinical features of PTB patients
| SNP (M/m) | Clinical features | Genotypes | Alleles | |||||
|---|---|---|---|---|---|---|---|---|
| MM | Mm | mm |
| M | m |
| ||
| rs10120023 (C/T) | Fever | |||||||
| + | 65 (75.58) | 19 (22.09) | 2 (2.33) | 0.761 | 149 (86.63) | 23 (13.37) | 0.711 | |
| − | 301 (76.59) | 87 (22.14) | 5 (1.27) | 689 (87.66) | 97 (12.34) | |||
| Drug resistance | ||||||||
| + | 54 (72.00) | 20 (26.67) | 1 (1.33) | 0.574 | 128 (85.33) | 22 (14.67) | 0.376 | |
| − | 314 (77.34) | 86 (21.18) | 6 (1.48) | 714 (87.93) | 98 (12.07) | |||
| DILI | ||||||||
| + | 50 (71.43) | 19 (27.14) | 1 (1.43) | 0.552 | 119 (85.00) | 21 (15.00) | 0.384 | |
| − | 318 (77.00) | 88 (21.31) | 7 (1.69) | 724 (87.65) | 102 (12.35) | |||
| Pulmonary infection | ||||||||
| + | 81 (77.14) | 23 (21.90) | 1 (0.95) | 0.810 | 185 (88.10) | 25 (11.90) | 0.684 | |
| − | 287 (75.93) | 84 (22.22) | 7 (1.85) | 658 (87.04) | 98 (12.96) | |||
| Hypoproteinemia | ||||||||
| + | 24 (70.59) | 10 (29.41) | 0 | 0.443 | 58 (85.29) | 10 (14.71) | 0.613 | |
| − | 344 (76.61) | 97 (21.60) | 8 (1.78) | 785 (87.42) | 113 (12.58) | |||
| Leukopenia | ||||||||
| + | 24 (72.73) | 9 (27.27) | 0 | 0.588 | 57 (86.36) | 9 (13.64) | 0.820 | |
| − | 344 (76.44) | 98 (21.78) | 8 (1.78) | 786 (87.33) | 114 (12.67) | |||
| rs1071583 (C/T) | Fever | |||||||
| + | 27 (31.40) | 39 (45.35) | 20 (23.26) | 0.136 | 93 (54.07) | 79 (45.93) | 0.277 | |
| − | 86 (21.88) | 217 (55.22) | 90 (22.90) | 389 (49.49) | 397 (50.51) | |||
| Drug resistance | ||||||||
| + | 23 (30.67) | 30 (40.00) | 22 (29.33) | 0.040 | 76 (50.67) | 74 (49.33) | 0.903 | |
| − | 90 (22.17) | 227 (55.91) | 89 (21.92) | 407 (50.12) | 405 (49.88) | |||
| DILI | ||||||||
| + | 20 (28.57) | 38 (54.29) | 12 (17.14) | 0.353 | 78 (55.71) | 62 (44.29) | 0.167 | |
| − | 94 (22.76) | 220 (53.27) | 99 (23.97) | 408 (49.39) | 418 (50.61) | |||
| Pulmonary infection | ||||||||
| + | 23 (21.90) | 56 (53.33) | 26 (24.76) | 0.840 | 102 (48.57) | 108 (51.43) | 0.569 | |
| − | 91 (24.07) | 202 (53.44) | 85 (22.49) | 384 (50.79) | 372 (49.21) | |||
| Hypoproteinemia | ||||||||
| + | 8 (23.53) | 20 (58.82) | 6 (17.65) | 0.721 | 36 (52.94) | 32 (47.06) | 0.653 | |
| − | 106 (23.61) | 238 (53.01) | 105 (23.38) | 450 (50.11) | 448 (49.89) | |||
| Leukopenia | ||||||||
| + | 12 (36.36) | 12 (36.36) | 9 (27.27) | 0.097 | 36 (54.55) | 30 (45.45) | 0.476 | |
| − | 102 (22.67) | 246 (54.67) | 102 (22.67) | 450 (50.00) | 450 (50.00) | |||
| rs3813800 (G/C) | Fever | |||||||
| + | 63 (73.26) | 22 (25.58) | 1 (1.16) | 0.830 | 148 (86.05) | 24 (13.95) | 0.989 | |
| − | 291 (74.05) | 94 (23.92) | 8 (2.04) | 676 (86.01) | 110 (13.99) | |||
| Drug resistance | ||||||||
| + | 53 (70.67) | 20 (26.67) | 2 (2.67) | 0.734 | 126 (84.00) | 24 (16.00) | 0.450 | |
| − | 302 (74.38) | 97 (23.89) | 7 (1.72) | 701 (86.33) | 111 (13.67) | |||
| DILI | ||||||||
| + | 56 (80.00) | 12 (17.14) | 2 (2.86) | 0.281 | 124 (88.57) | 16 (11.43) | 0.347 | |
| − | 301 (72.88) | 105 (25.42) | 7 (1.69) | 707 (85.59) | 119 (14.41) | |||
| Pulmonary infection | ||||||||
| + | 88 (83.81) | 15 (14.29) | 2 (1.90) | 0.027 | 191 (90.95) | 19 (9.05) | 0.020 | |
| − | 269 (71.16) | 102 (26.98) | 7 (1.85) | 640 (84.66) | 116 (15.34) | |||
| Hypoproteinemia | ||||||||
| + | 25 (73.53) | 9 (26.47) | 0 | 0.684 | 59 (87.76) | 9 (13.24) | 0.855 | |
| − | 332 (73.94) | 108 (24.05) | 9 (2.01) | 772 (85.97) | 126 (14.03) | |||
| Leukopenia | ||||||||
| + | 22 (66.67) | 11 (33.33) | 0 | 0.346 | 55 (83.33) | 11 (16.67) | 0.514 | |
| − | 335 (74.44) | 106 (23.56) | 9 (2.00) | 776 (86.22) | 124 (13.78) | |||
| rs10794501 (T/A) | Fever | |||||||
| + | 67 (77.91) | 19 (22.09) | 0 | 0.635 | 153 (88.95) | 19 (11.05) | 0.843 | |
| − | 306 (77.86) | 83 (21.12) | 4 (1.02) | 695 (88.42) | 91 (11.58) | |||
| Drug resistance | ||||||||
| + | 58 (77.33) | 16 (21.33) | 1 (1.33) | 0.872 | 132 (88.00) | 18 (12.00) | 0.813 | |
| − | 317 (78.08) | 86 (21.18) | 3 (0.74) | 720 (88.67) | 92 (11.33) | |||
| DILI | ||||||||
| + | 53 (75.71) | 17 (24.29) | 0 | 0.605 | 123 (87.86) | 17 (12.14) | 0.826 | |
| − | 322 (77.97) | 87 (21.07) | 4 (0.97) | 731 (88.50) | 95 (11.50) | |||
| Pulmonary infection | ||||||||
| + | 81 (77.14) | 24 (22.86) | 0 | 0.542 | 186 (88.57) | 24 (11.43) | 0.932 | |
| − | 294 (77.78) | 80 (21.16) | 4 (1.06) | 668 (88.36) | 88 (11.64) | |||
| Hypoproteinemia | ||||||||
| + | 24 (70.59) | 9 (26.47) | 1 (2.94) | 0.270 | 57 (83.82) | 11 (16.18) | 0.211 | |
| − | 351 (78.17) | 95 (21.16) | 3 (0.67) | 797 (88.75) | 101 (11.25) | |||
| Leukopenia | ||||||||
| + | 24 (72.73) | 9 (27.27) | 0 | 0.623 | 57 (86.36) | 9 (13.64) | 0.591 | |
| − | 351 (78.00) | 95 (21.11) | 4 (0.89) | 797 (88.56) | 103 (11.44) | |||
SNP, single nucleotide polymorphism; PTB, pulmonary tuberculosis; M, major alleles; m, minor alleles; Chi‐square test or Fisher exact tests were used for statistical analysis.
p < 0.05 was considered as the level of significance; Bold Values indicated as p < 0.05.
Haplotype analysis of FCN1 gene in PTB patients and controls
| Haplotype | PTB | Controls |
|
|
|---|---|---|---|---|
| rs10120023‐rs1071583 | ||||
| CC | 370.78 (37.9) | 395.48 (40.4) | 0.240 | 0.90 (0.75, 1.08) |
| CT | 481.22 (49.2) | 459.53 (47.0) | 0.344 | 1.09 (0.91,1.30) |
| TC | 124.22 (12.7) | 119.52 (12.2) | 0.759 | 1.04 (0.80,1.36) |
PTB, pulmonary tuberculosis; OR, odds ratio; CI, confidence interval; Haplotype analysis was conducted with the SHEsis software; Global χ2 is 1.385, df = 2 (frequency < 0.03 in both control and case has been dropped), Fisher's p value is 0.500; p < 0.05 was considered as the level of significance.
Haplotype analysis of FCN3 gene in PTB patients and controls
| Haplotype | PTB | Controls |
| OR (95% CI) |
|---|---|---|---|---|
| rs3813800‐rs10794501 | ||||
| CT | 129.65 (13.3) | 126.90 (13.0) | 0.811 | 1.03 (0.79, 1.34) |
| GA | 106.65 (10.9) | 117.90 (12.1) | 0.455 | 0.90 (0.68,1.19) |
| GT | 735.35 (75.2) | 733.10 (75.0) | 0.715 | 1.04 (0.85,1.28) |
PTB, pulmonary tuberculosis; OR, odds ratio; CI, confidence interval; Haplotype analysis was conducted with the SHEsis software; Global χ2 is 0.577, df = 2 (frequency < 0.03 in both control and case has been dropped), Fisher's p value is 0.749; p < 0.05 was considered as the level of significance.