Literature DB >> 33589689

High-throughput behavioral screen in C. elegans reveals Parkinson's disease drug candidates.

Salman Sohrabi1, Danielle E Mor1, Rachel Kaletsky1, William Keyes1, Coleen T Murphy2.   

Abstract

We recently linked branched-chain amino acid transferase 1 (BCAT1) dysfunction with the movement disorder Parkinson's disease (PD), and found that RNAi-mediated knockdown of neuronal bcat-1 in C. elegans causes abnormal spasm-like 'curling' behavior with age. Here we report the development of a machine learning-based workflow and its application to the discovery of potentially new therapeutics for PD. In addition to simplifying quantification and maintaining a low data overhead, our simple segment-train-quantify platform enables fully automated scoring of image stills upon training of a convolutional neural network. We have trained a highly reliable neural network for the detection and classification of worm postures in order to carry out high-throughput curling analysis without the need for user intervention or post-inspection. In a proof-of-concept screen of 50 FDA-approved drugs, enasidenib, ethosuximide, metformin, and nitisinone were identified as candidates for potential late-in-life intervention in PD. These findings point to the utility of our high-throughput platform for automated scoring of worm postures and in particular, the discovery of potential candidate treatments for PD.

Entities:  

Year:  2021        PMID: 33589689      PMCID: PMC7884385          DOI: 10.1038/s42003-021-01731-z

Source DB:  PubMed          Journal:  Commun Biol        ISSN: 2399-3642


  23 in total

1.  Episodic swimming behavior in the nematode C. elegans.

Authors:  Rajarshi Ghosh; Scott W Emmons
Journal:  J Exp Biol       Date:  2008-12       Impact factor: 3.312

Review 2.  Microfluidic systems for high-throughput and high-content screening using the nematode Caenorhabditis elegans.

Authors:  Matteo Cornaglia; Thomas Lehnert; Martin A M Gijs
Journal:  Lab Chip       Date:  2017-11-07       Impact factor: 6.799

Review 3.  High-Content and High-Throughput In Vivo Drug Screening Platforms Using Microfluidics.

Authors:  Adela Ben-Yakar
Journal:  Assay Drug Dev Technol       Date:  2019-01       Impact factor: 1.738

4.  Enasidenib in mutant IDH2 relapsed or refractory acute myeloid leukemia.

Authors:  Eytan M Stein; Courtney D DiNardo; Daniel A Pollyea; Amir T Fathi; Gail J Roboz; Jessica K Altman; Richard M Stone; Daniel J DeAngelo; Ross L Levine; Ian W Flinn; Hagop M Kantarjian; Robert Collins; Manish R Patel; Arthur E Frankel; Anthony Stein; Mikkael A Sekeres; Ronan T Swords; Bruno C Medeiros; Christophe Willekens; Paresh Vyas; Alessandra Tosolini; Qiang Xu; Robert D Knight; Katharine E Yen; Sam Agresta; Stephane de Botton; Martin S Tallman
Journal:  Blood       Date:  2017-06-06       Impact factor: 25.476

5.  A Generative Statistical Algorithm for Automatic Detection of Complex Postures.

Authors:  Stanislav Nagy; Marc Goessling; Yali Amit; David Biron
Journal:  PLoS Comput Biol       Date:  2015-10-06       Impact factor: 4.475

6.  QuantWorm: a comprehensive software package for Caenorhabditis elegans phenotypic assays.

Authors:  Sang-Kyu Jung; Boanerges Aleman-Meza; Celeste Riepe; Weiwei Zhong
Journal:  PLoS One       Date:  2014-01-08       Impact factor: 3.240

7.  Resolving coiled shapes reveals new reorientation behaviors in C. elegans.

Authors:  Onno D Broekmans; Jarlath B Rodgers; William S Ryu; Greg J Stephens
Journal:  Elife       Date:  2016-09-20       Impact factor: 8.140

8.  WormSizer: high-throughput analysis of nematode size and shape.

Authors:  Brad T Moore; James M Jordan; L Ryan Baugh
Journal:  PLoS One       Date:  2013-02-22       Impact factor: 3.240

Review 9.  The mechanisms of action of metformin.

Authors:  Graham Rena; D Grahame Hardie; Ewan R Pearson
Journal:  Diabetologia       Date:  2017-08-03       Impact factor: 10.122

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  3 in total

1.  Using a Caenorhabditis elegans Parkinson's Disease Model to Assess Disease Progression and Therapy Efficiency.

Authors:  Samantha Hughes; Maritza van Dop; Nikki Kolsters; David van de Klashorst; Anastasia Pogosova; Anouk M Rijs
Journal:  Pharmaceuticals (Basel)       Date:  2022-04-22

Review 2.  Exploring the Pharmacological Potential of Metformin for Neurodegenerative Diseases.

Authors:  Ming-Rui Du; Quan-You Gao; Chen-Lin Liu; Lin-Ya Bai; Tian Li; Fei-Long Wei
Journal:  Front Aging Neurosci       Date:  2022-04-26       Impact factor: 5.702

3.  GAIT-GM integrative cross-omics analyses reveal cholinergic defects in a C. elegans model of Parkinson's disease.

Authors:  Lauren M McIntyre; Francisco Huertas; Alison M Morse; Rachel Kaletsky; Coleen T Murphy; Vrinda Kalia; Gary W Miller; Olexander Moskalenko; Ana Conesa; Danielle E Mor
Journal:  Sci Rep       Date:  2022-02-28       Impact factor: 4.379

  3 in total

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