Literature DB >> 33588118

Differentiable neural architecture search for optimal spatial/temporal brain function network decomposition.

Qing Li1, Xia Wu2, Tianming Liu3.   

Abstract

It has been a key topic to decompose the brain's spatial/temporal function networks from 4D functional magnetic resonance imaging (fMRI) data. With the advantages of robust and meaningful brain pattern extraction, deep neural networks have been shown to be more powerful and flexible in fMRI data modeling than other traditional methods. However, the challenge of designing neural network architecture for high-dimensional and complex fMRI data has also been realized recently. In this paper, we propose a new spatial/temporal differentiable neural architecture search algorithm (ST-DARTS) for optimal brain network decomposition. The core idea of ST-DARTS is to optimize the inner cell structure of the vanilla recurrent neural network (RNN) in order to effectively decompose spatial/temporal brain function networks from fMRI data. Based on the evaluations on all seven fMRI tasks in human connectome project (HCP) dataset, the ST-DARTS model is shown to perform promisingly, both spatially (i.e., it can recognize the most stimuli-correlated spatial brain network activation that is very similar to the benchmark) and temporally (i.e., its temporal activity is highly positively correlated with the task-design). To further improve the efficiency of ST-DARTS model, we introduce a flexible early-stopping mechanism, named as ST-DARTS+, which further improves experimental results significantly. To our best knowledge, the proposed ST-DARTS and ST-DARTS+ models are among the early efforts in optimally decomposing spatial/temporal brain function networks from fMRI data with neural architecture search strategy and they demonstrate great promise.
Copyright © 2021 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Differentiable neural architecture search; Recurrent neural networks; Spatial/temporal; Task-based fMRI

Mesh:

Year:  2021        PMID: 33588118     DOI: 10.1016/j.media.2021.101974

Source DB:  PubMed          Journal:  Med Image Anal        ISSN: 1361-8415            Impact factor:   8.545


  2 in total

1.  Hierarchical Individual Naturalistic Functional Brain Networks with Group Consistency uncovered by a Two-Stage NAS-Volumetric Sparse DBN Framework.

Authors:  Shuhan Xu; Yudan Ren; Zeyang Tao; Limei Song; Xiaowei He
Journal:  eNeuro       Date:  2022-08-19

2.  Hierarchical Spatio-Temporal Modeling of Naturalistic Functional Magnetic Resonance Imaging Signals via Two-Stage Deep Belief Network With Neural Architecture Search.

Authors:  Yudan Ren; Shuhan Xu; Zeyang Tao; Limei Song; Xiaowei He
Journal:  Front Neurosci       Date:  2021-12-08       Impact factor: 4.677

  2 in total

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