Literature DB >> 33585980

The role of artificial intelligence in the battle against antimicrobial-resistant bacteria.

Hul Juan Lau1, Chern Hong Lim2, Su Chern Foo1,3, Hock Siew Tan4,5.   

Abstract

Antimicrobial resistance (AMR) in bacteria is a global health crisis due to the rapid emergence of multidrug-resistant bacteria and the lengthy development of new antimicrobials. In light of this, artificial intelligence in the form of machine learning has been viewed as a potential counter to delay the spread of AMR. With the aid of AI, there are possibilities to predict and identify AMR in bacteria efficiently. Furthermore, a combination of machine learning algorithms and lab testing can help to accelerate the process of discovering new antimicrobials. To date, many machine learning algorithms for antimicrobial-resistance discovery had been created and vigorously validated. Most of these algorithms produced accurate results and outperformed the traditional methods which relied on sequence comparison within a database. This mini-review will provide an updated overview of antimicrobial design workflow using the latest machine-learning antimicrobial discovery algorithms in the last 5 years. With this review, we hope to improve upon the current AMR identification and antimicrobial development techniques by introducing the use of AI into the mix, including how the algorithms could be made more effective.

Entities:  

Keywords:  AI algorithms; Antimicrobial design; Antimicrobial discovery; Antimicrobial-resistance identification; Halicin

Year:  2021        PMID: 33585980     DOI: 10.1007/s00294-021-01156-5

Source DB:  PubMed          Journal:  Curr Genet        ISSN: 0172-8083            Impact factor:   3.886


  25 in total

1.  Rapid antibiotic-resistance predictions from genome sequence data for Staphylococcus aureus and Mycobacterium tuberculosis.

Authors:  Phelim Bradley; N Claire Gordon; Timothy M Walker; Laura Dunn; Simon Heys; Bill Huang; Sarah Earle; Louise J Pankhurst; Luke Anson; Mariateresa de Cesare; Paolo Piazza; Antonina A Votintseva; Tanya Golubchik; Daniel J Wilson; David H Wyllie; Roland Diel; Stefan Niemann; Silke Feuerriegel; Thomas A Kohl; Nazir Ismail; Shaheed V Omar; E Grace Smith; David Buck; Gil McVean; A Sarah Walker; Tim E A Peto; Derrick W Crook; Zamin Iqbal
Journal:  Nat Commun       Date:  2015-12-21       Impact factor: 14.919

2.  A pan-genome-based machine learning approach for predicting antimicrobial resistance activities of the Escherichia coli strains.

Authors:  Hsuan-Lin Her; Yu-Wei Wu
Journal:  Bioinformatics       Date:  2018-07-01       Impact factor: 6.937

3.  Antimicrobial Resistance Prediction for Gram-Negative Bacteria via Game Theory-Based Feature Evaluation.

Authors:  Abu Sayed Chowdhury; Douglas R Call; Shira L Broschat
Journal:  Sci Rep       Date:  2019-10-09       Impact factor: 4.379

Review 4.  Computer-Aided Design of Antimicrobial Peptides: Are We Generating Effective Drug Candidates?

Authors:  Marlon H Cardoso; Raquel Q Orozco; Samilla B Rezende; Gisele Rodrigues; Karen G N Oshiro; Elizabete S Cândido; Octávio L Franco
Journal:  Front Microbiol       Date:  2020-01-22       Impact factor: 5.640

Review 5.  Discovery and preclinical development of new antibiotics.

Authors:  Diarmaid Hughes; Anders Karlén
Journal:  Ups J Med Sci       Date:  2014-03-19       Impact factor: 2.384

Review 6.  Antimicrobial Proteins and Peptides in Early Life: Ontogeny and Translational Opportunities.

Authors:  Anna J Battersby; Jasmeet Khara; Victoria J Wright; Ofer Levy; Beate Kampmann
Journal:  Front Immunol       Date:  2016-08-18       Impact factor: 7.561

7.  Antimicrobial Resistance Prediction in PATRIC and RAST.

Authors:  James J Davis; Sébastien Boisvert; Thomas Brettin; Ronald W Kenyon; Chunhong Mao; Robert Olson; Ross Overbeek; John Santerre; Maulik Shukla; Alice R Wattam; Rebecca Will; Fangfang Xia; Rick Stevens
Journal:  Sci Rep       Date:  2016-06-14       Impact factor: 4.379

8.  Predictive computational phenotyping and biomarker discovery using reference-free genome comparisons.

Authors:  Alexandre Drouin; Sébastien Giguère; Maxime Déraspe; Mario Marchand; Michael Tyers; Vivian G Loo; Anne-Marie Bourgault; François Laviolette; Jacques Corbeil
Journal:  BMC Genomics       Date:  2016-09-26       Impact factor: 3.969

9.  Machine learning and structural analysis of Mycobacterium tuberculosis pan-genome identifies genetic signatures of antibiotic resistance.

Authors:  Erol S Kavvas; Edward Catoiu; Nathan Mih; James T Yurkovich; Yara Seif; Nicholas Dillon; David Heckmann; Amitesh Anand; Laurence Yang; Victor Nizet; Jonathan M Monk; Bernhard O Palsson
Journal:  Nat Commun       Date:  2018-10-17       Impact factor: 14.919

10.  Machine learning with random subspace ensembles identifies antimicrobial resistance determinants from pan-genomes of three pathogens.

Authors:  Jason C Hyun; Erol S Kavvas; Jonathan M Monk; Bernhard O Palsson
Journal:  PLoS Comput Biol       Date:  2020-03-02       Impact factor: 4.475

View more
  4 in total

Review 1.  Application of Artificial Intelligence in Combating High Antimicrobial Resistance Rates.

Authors:  Ali A Rabaan; Saad Alhumaid; Abbas Al Mutair; Mohammed Garout; Yem Abulhamayel; Muhammad A Halwani; Jeehan H Alestad; Ali Al Bshabshe; Tarek Sulaiman; Meshal K AlFonaisan; Tariq Almusawi; Hawra Albayat; Mohammed Alsaeed; Mubarak Alfaresi; Sultan Alotaibi; Yousef N Alhashem; Mohamad-Hani Temsah; Urooj Ali; Naveed Ahmed
Journal:  Antibiotics (Basel)       Date:  2022-06-08

2.  Vibrio alginolyticus Survives From Ofloxacin Stress by Metabolic Adjustment.

Authors:  Yue Yin; Yuanpan Yin; Hao Yang; Zhuanggui Chen; Jun Zheng; Bo Peng
Journal:  Front Microbiol       Date:  2022-03-16       Impact factor: 5.640

Review 3.  From Genome to Drugs: New Approaches in Antimicrobial Discovery.

Authors:  Federico Serral; Florencia A Castello; Ezequiel J Sosa; Agustín M Pardo; Miranda Clara Palumbo; Carlos Modenutti; María Mercedes Palomino; Alberto Lazarowski; Jerónimo Auzmendi; Pablo Ivan P Ramos; Marisa F Nicolás; Adrián G Turjanski; Marcelo A Martí; Darío Fernández Do Porto
Journal:  Front Pharmacol       Date:  2021-06-09       Impact factor: 5.810

Review 4.  Antimicrobial Compounds from Microorganisms.

Authors:  Cynthia Amaning Danquah; Prince Amankwah Baffour Minkah; Isaiah Osei Duah Junior; Kofi Bonsu Amankwah; Samuel Owusu Somuah
Journal:  Antibiotics (Basel)       Date:  2022-02-22
  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.