Literature DB >> 33584177

Searching Far and Genome-Wide: The Relevance of Association Studies in Amyotrophic Lateral Sclerosis.

Kelly A Rich1, Jennifer Roggenbuck1, Stephen J Kolb1,2.   

Abstract

Genome-wide association studies (GWAS) and rare variant association studies (RVAS) are applied across many areas of complex disease to analyze variation in whole genomes of thousands of unrelated patients. These approaches are able to identify variants and/or biological pathways which are associated with disease status and, in contrast to traditional linkage studies or candidate gene approaches, do so without requiring multigenerational affected families, prior hypotheses, or known genes of interest. However, the novel associations identified by these methods typically have lower effect sizes than those found in classical family studies. In the motor neuron disease amyotrophic lateral sclerosis (ALS), GWAS, and RVAS have been used to identify multiple disease-associated genes but have not yet resulted in novel therapeutic interventions. There is significant urgency within the ALS community to identify additional genetic markers of disease to uncover novel biological mechanisms, stratify genetic subgroups of disease, and drive drug development. Given the widespread and increasing application of genetic association studies of complex disease, it is important to recognize the strengths and limitations of these approaches. Here, we review ALS gene discovery via GWAS and RVAS.
Copyright © 2021 Rich, Roggenbuck and Kolb.

Entities:  

Keywords:  amyotrophic lateral sclerosis; gene therapy; genetic testing; genetic variants; genome; genome wide association studies (GWAS); rare variant association study (RVAS)

Year:  2021        PMID: 33584177      PMCID: PMC7873947          DOI: 10.3389/fnins.2020.603023

Source DB:  PubMed          Journal:  Front Neurosci        ISSN: 1662-453X            Impact factor:   4.677


  121 in total

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Journal:  Cell       Date:  2010-04-16       Impact factor: 41.582

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3.  Aberrant morphology and residual transmitter release at the Munc13-deficient mouse neuromuscular synapse.

Authors:  Frédérique Varoqueaux; Michèle S Sons; Jaap J Plomp; Nils Brose
Journal:  Mol Cell Biol       Date:  2005-07       Impact factor: 4.272

4.  Cloning and expression of myelin-associated oligodendrocytic basic protein. A novel basic protein constituting the central nervous system myelin.

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Journal:  J Biol Chem       Date:  1994-12-16       Impact factor: 5.157

5.  A hexanucleotide repeat expansion in C9ORF72 is the cause of chromosome 9p21-linked ALS-FTD.

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Journal:  Neuron       Date:  2011-09-21       Impact factor: 17.173

Review 6.  10 Years of GWAS Discovery: Biology, Function, and Translation.

Authors:  Peter M Visscher; Naomi R Wray; Qian Zhang; Pamela Sklar; Mark I McCarthy; Matthew A Brown; Jian Yang
Journal:  Am J Hum Genet       Date:  2017-07-06       Impact factor: 11.025

7.  Rare variant association studies: considerations, challenges and opportunities.

Authors:  Paul L Auer; Guillaume Lettre
Journal:  Genome Med       Date:  2015-02-23       Impact factor: 11.117

8.  Genome-wide scan reveals association of psoriasis with IL-23 and NF-kappaB pathways.

Authors:  Rajan P Nair; Kristina Callis Duffin; Cynthia Helms; Jun Ding; Philip E Stuart; David Goldgar; Johann E Gudjonsson; Yun Li; Trilokraj Tejasvi; Bing-Jian Feng; Andreas Ruether; Stefan Schreiber; Michael Weichenthal; Dafna Gladman; Proton Rahman; Steven J Schrodi; Sampath Prahalad; Stephen L Guthery; Judith Fischer; Wilson Liao; Pui-Yan Kwok; Alan Menter; G Mark Lathrop; Carol A Wise; Ann B Begovich; John J Voorhees; James T Elder; Gerald G Krueger; Anne M Bowcock; Gonçalo R Abecasis
Journal:  Nat Genet       Date:  2009-01-25       Impact factor: 38.330

9.  Biological insights from 108 schizophrenia-associated genetic loci.

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Journal:  Nature       Date:  2014-07-22       Impact factor: 49.962

10.  Identification of new susceptibility loci for type 2 diabetes and shared etiological pathways with coronary heart disease.

Authors:  Wei Zhao; Asif Rasheed; Emmi Tikkanen; Jung-Jin Lee; Adam S Butterworth; Joanna M M Howson; Themistocles L Assimes; Rajiv Chowdhury; Marju Orho-Melander; Scott Damrauer; Aeron Small; Senay Asma; Minako Imamura; Toshimasa Yamauch; John C Chambers; Peng Chen; Bishwa R Sapkota; Nabi Shah; Sehrish Jabeen; Praveen Surendran; Yingchang Lu; Weihua Zhang; Atif Imran; Shahid Abbas; Faisal Majeed; Kevin Trindade; Nadeem Qamar; Nadeem Hayyat Mallick; Zia Yaqoob; Tahir Saghir; Syed Nadeem Hasan Rizvi; Anis Memon; Syed Zahed Rasheed; Fazal-Ur-Rehman Memon; Khalid Mehmood; Naveeduddin Ahmed; Irshad Hussain Qureshi; Wasim Iqbal; Uzma Malik; Narinder Mehra; Jane Z Kuo; Wayne H-H Sheu; Xiuqing Guo; Chao A Hsiung; Jyh-Ming J Juang; Kent D Taylor; Yi-Jen Hung; Wen-Jane Lee; Thomas Quertermous; I-Te Lee; Chih-Cheng Hsu; Erwin P Bottinger; Sarju Ralhan; Yik Ying Teo; Tzung-Dau Wang; Dewan S Alam; Emanuele Di Angelantonio; Steve Epstein; Sune F Nielsen; Børge G Nordestgaard; Anne Tybjaerg-Hansen; Robin Young; Marianne Benn; Ruth Frikke-Schmidt; Pia R Kamstrup; J Wouter Jukema; Naveed Sattar; Roelof Smit; Ren-Hua Chung; Kae-Woei Liang; Sonia Anand; Dharambir K Sanghera; Samuli Ripatti; Ruth J F Loos; Jaspal S Kooner; E Shyong Tai; Jerome I Rotter; Yii-Der Ida Chen; Philippe Frossard; Shiro Maeda; Takashi Kadowaki; Muredach Reilly; Guillaume Pare; Olle Melander; Veikko Salomaa; Daniel J Rader; John Danesh; Benjamin F Voight; Danish Saleheen
Journal:  Nat Genet       Date:  2017-09-04       Impact factor: 38.330

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  2 in total

Review 1.  Genetics of amyotrophic lateral sclerosis: seeking therapeutic targets in the era of gene therapy.

Authors:  Naoki Suzuki; Ayumi Nishiyama; Hitoshi Warita; Masashi Aoki
Journal:  J Hum Genet       Date:  2022-06-13       Impact factor: 3.172

Review 2.  Progress in Amyotrophic Lateral Sclerosis Gene Discovery: Reflecting on Classic Approaches and Leveraging Emerging Technologies.

Authors:  Samuel N Smukowski; Heather Maioli; Caitlin S Latimer; Thomas D Bird; Suman Jayadev; Paul N Valdmanis
Journal:  Neurol Genet       Date:  2022-04-27
  2 in total

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