Giulia Giubertoni1, Alberto Pérez de Alba Ortíz2, Fouzia Bano3, Xing Zhang4, Robert J Linhardt4, Dixy E Green5, Paul L DeAngelis5, Gijsje H Koenderink6, Ralf P Richter3, Bernd Ensing2, Huib J Bakker1. 1. AMOLF, Science Park 104, 1098 XG Amsterdam, The Netherlands. 2. Van't Hoff Institute for Molecular Sciences, University of Amsterdam, P.O. Box 94157, 1090 GD Amsterdam, The Netherlands. 3. School of Biomedical Sciences, Faculty of Biological Sciences, School of Physics and Astronomy, Faculty of Engineering and Physical Sciences, Astbury Centre of Structural Molecular Biology, and Bragg Centre for Materials Research, University of Leeds, LS2 9JT Leeds, U.K. 4. Center for Biotechnology and Interdisciplinary Studies, Rensselaer Polytechnic Institute, 110 8th Street, Troy, 12180 New York, United States. 5. Department of Biochemistry and Molecular Biology, University of Oklahoma Health Sciences Center, 940 Stanton L. Young Blvd., Oklahoma, 73104 Oklahoma, United States. 6. Department of Bionanoscience, Kavli Institute of Nanoscience Delft, Delft University of Technology, Van der Maasweg 9, 2629 HZ Delft, The Netherlands.
Abstract
The biological functions of natural polyelectrolytes are strongly influenced by the presence of ions, which bind to the polymer chains and thereby modify their properties. Although the biological impact of such modifications is well recognized, a detailed molecular picture of the binding process and of the mechanisms that drive the subsequent structural changes in the polymer is lacking. Here, we study the molecular mechanism of the condensation of calcium, a divalent cation, on hyaluronan, a ubiquitous polymer in human tissues. By combining two-dimensional infrared spectroscopy experiments with molecular dynamics simulations, we find that calcium specifically binds to hyaluronan at millimolar concentrations. Because of its large size and charge, the calcium cation can bind simultaneously to the negatively charged carboxylate group and the amide group of adjacent saccharide units. Molecular dynamics simulations and single-chain force spectroscopy measurements provide evidence that the binding of the calcium ions weakens the intramolecular hydrogen-bond network of hyaluronan, increasing the flexibility of the polymer chain. We also observe that the binding of calcium to hyaluronan saturates at a maximum binding fraction of ∼10-15 mol %. This saturation indicates that the binding of Ca2+ strongly reduces the probability of subsequent binding of Ca2+ at neighboring binding sites, possibly as a result of enhanced conformational fluctuations and/or electrostatic repulsion effects. Our findings provide a detailed molecular picture of ion condensation and reveal the severe effect of a few, selective and localized electrostatic interactions on the rigidity of a polyelectrolyte chain.
The biological functions of natural polyelectrolytes are strongly influenced by the presence of ions, which bind to the polymer chains and thereby modify their properties. Although the biological impact of such modifications is well recognized, a detailed molecular picture of the binding process and of the mechanisms that drive the subsequent structural changes in the polymer is lacking. Here, we study the molecular mechanism of the condensation of calcium, a divalent cation, on hyaluronan, a ubiquitous polymer in human tissues. By combining two-dimensional infrared spectroscopy experiments with molecular dynamics simulations, we find that calcium specifically binds to hyaluronan at millimolar concentrations. Because of its large size and charge, the calciumcation can bind simultaneously to the negatively charged carboxylate group and the amide group of adjacent saccharide units. Molecular dynamics simulations and single-chain force spectroscopy measurements provide evidence that the binding of the calcium ions weakens the intramolecular hydrogen-bond network of hyaluronan, increasing the flexibility of the polymer chain. We also observe that the binding of calcium to hyaluronan saturates at a maximum binding fraction of ∼10-15 mol %. This saturation indicates that the binding of Ca2+ strongly reduces the probability of subsequent binding of Ca2+ at neighboring binding sites, possibly as a result of enhanced conformational fluctuations and/or electrostatic repulsion effects. Our findings provide a detailed molecular picture of ion condensation and reveal the severe effect of a few, selective and localized electrostatic interactions on the rigidity of a polyelectrolyte chain.
Polyelectrolytes are
charged polymers, which are widely present
in nature and in manmade materials for applications ranging from wound
dressing to oil recovery.[1,2] Because of their charged
nature, the conformation and physical properties of polyelectrolyte
chains strongly depend on the solution pH and on the salt conditions.
The electrostatic repulsive forces among the charges along the chain
enhance the polymerrigidity. Usually, dissolved ions are mobile and
can thus screen the charges along the chain, thereby reducing the
total persistence length that is a measure of the chain rigidity.[3] Localized electrostatic interactions between
ions and the charges on the chain (normally referred to as Manning
condensation) can occur if the distance between the charges on the
chain is less than the Bjerrum length (λB).[4] One possible consequence is that the polymer
backbone wraps around bound ions.[5,6] Condensation
of multivalent ions has also been reported to entail local ion “jackets”,
and consequently, a reduction in persistence length of polyelectrolyte
chains can also happen without creating local wrapping of the chain.[7] Although the effect of condensation on the configuration
of polyelectrolytes has been thoroughly studied in previous work,[5−8] the molecular details of the complexes formed between cations and
polyelectrolytes, and the molecular mechanisms underlying the conformational
changes that follow from the ion binding are still unknown.Among all the natural polyelectrolytes, a specific class of extracellular
matrix polysaccharides, the glycosaminoglycans (GAGs), is arguably
one of the most important ones for animal life. In the human body,
GAGs are critically important in many biological processes, such as
proliferation, anticoagulation,[9,10] inflammatory responses,[11,12] and the immune response to external pathogens.[13] Hyaluronan (HA) is the structurally simplest member of
the GAG family. Alone or together with other extracellular matrix
macromolecules (e.g., collagen), it dictates tissue
elasticity, hydration, and permeability, and it also directs cell
behavior through multivalent engagement with cell surface receptors,
such as CD44.[14] These properties allow
HA to mediate diverse functions in a wide range of physiological and
pathological processes, including development,[15,16] mammalian reproduction,[17] inflammation,[18] and tissue lubrication.[19,20] Diseases such as cancer or osteoarthritis are correlated with changes
in the average molecular weight, supramolecular organization, and
concentration of hyaluronan.[21−23] Thanks to its biocompatibility,
hyaluronan is also widely applied as a building block for responsive
and biocompatible hydrogels.[24−26]An interesting feature
of hyaluronan is the sensitivity of its
mechanical properties to a particular divalent cation, calcium. Calcium
ions have been found to show an unusually strong effect on the thickness
of hyaluronan brushes (i.e., dense arrays of hyaluronan
chains grafted with one end to a surface) designed to emulate certain
properties of the glycocalyx of cells.[27] Moreover, at a concentration of a few millimolar of calcium ions,
hyaluronan solutions show a decrease in viscosity that is much more
drastic than in the presence of a similar concentration of sodium
or magnesium.[28,29] Consistent with this finding,
a previous study also showed that calcium ion levels in the low millimolar
range cause a reduced translational diffusivity of small solutes,
such as glucose and lysine, in hyaluronanpolymer solutions.[30] These findings suggest that hyaluronan polymers
change their molecular conformation when interacting with calcium
ions.Hyaluronan is a linear polysaccharide composed of repeating
disaccharide
units (Figure a) made
of N-acetylglucosamine (with an amide group) and
glucuronic acid (with a carboxyl group) monosaccharides linked together
by alternating β1 → 4 and β1 → 3 glycosidic
linkages. The contour length per disaccharide is 1.0 nm. The distance
between negative charges (at the carboxyl groups) is thus smaller
than the Bjerrum length for divalent cations (∼1.4 nm)[7,27] and ion condensation may occur, leading to a reduction of the charge
density along the chain.
Figure 1
(a) Molecular structure of a disaccharide unit
of hyaluronan containing
amide (red) and carboxylate (green) groups on adjacent saccharide units. (b) Linear FTIR infrared spectra
for a solution of hyaluronan at 20 mg/mL in water containing 0, 25,
50, 150, or 300 mM of calcium ions (as indicated). We observe the
absorption peaks of the antisymmetric stretching mode of the carboxylate
anion group (νant) and of the amide I vibration (νAM.I). All the spectra are background-subtracted. (c) Differential
FTIR infrared spectra obtained by subtracting the infrared spectrum
in pure water (0 mM Ca2+) from the other spectra shown
in (b). The error bars represent experimental errors due to background
fluctuations and were obtained by comparing two independent measurements
of the same solution.
(a) Molecular structure of a disaccharide unit
of hyaluronan containing
amide (red) and carboxylate (green) groups on adjacent saccharide units. (b) Linear FTIR infrared spectra
for a solution of hyaluronan at 20 mg/mL in water containing 0, 25,
50, 150, or 300 mM of calcium ions (as indicated). We observe the
absorption peaks of the antisymmetric stretching mode of the carboxylate
anion group (νant) and of the amide I vibration (νAM.I). All the spectra are background-subtracted. (c) Differential
FTIR infrared spectra obtained by subtracting the infrared spectrum
in pure water (0 mM Ca2+) from the other spectra shown
in (b). The error bars represent experimental errors due to background
fluctuations and were obtained by comparing two independent measurements
of the same solution.Here, we investigate
the interaction between hyaluronan and calcium
ions at the molecular level, with linear infrared (IR) spectroscopy,
femtosecond two-dimensional infrared (2DIR) spectroscopy, single-molecule
force spectroscopy, and molecular dynamics (MD) simulations. We find
that calcium ions bind to hyaluronan at millimolar concentrations,
forming complexes with the carboxylate anion and amide groups. We
further find that the formation of only a few of these complexes per
any one polymer chain suffices to change the intramolecular hydrogen
bond network and, as a result, the persistence length of hyaluronanpolymers. We thus obtain a direct molecular picture of the binding
mechanism between calcium and hyaluronan, and a molecular explanation
of the change in flexibility of the polymer upon interaction with
calcium ions.
Results
Complexation of Calcium
Ions with Hyaluronan
We used
linear and nonlinear IR spectroscopy to characterize the interaction
between calcium ions and HA (see Supporting Information Methods for details). In Figure b, we report linear infrared absorption spectra of
a solution of HA at a concentration of 20 mg/mL, where we vary the
CaCl2 concentration from 0 to 300 mM. In the frequency
region between 1580 and 1680 cm–1, we observe two
bands, one at 1609 cm–1 and the other at 1633 cm –1. Following the literature, we assign the band at
1609 cm–1 to the absorption band of the antisymmetric
stretching mode of the carboxylate anion group (νant) and the band at 1633 cm–1 to the absorption band
of the amide I vibration (νAM.I) of the amide group.[31] Upon addition of CaCl2, we observe
a small increase of the absorption around 1590 cm–1 and a decrease of the absorption near 1607 cm–1, indicating that the calcium affects the molecular vibrations of
the carboxylate anion group. Most notable, however, is the enhanced
absorption in the high-frequency region of the spectrum, corresponding
to the high-frequency wing of the amide I band (1650 cm–1). In the absence of calcium, the amide group is hydrated on average
by two water molecules, and each hydrogen bond induces a red-shift
of the amide I absorption band of 10–20 cm–1.[32,33] The observed partial blue-shift of the amide
I band from 1633 to 1650 cm–1 thus suggests that
calcium ions dehydrate a part of the amide groups. Computational studies
have shown that in simple model systems containing a single amide
group, calcium ions have a significant probability to be located close
to the carbonyl oxygen (<2.5 Å) and thus to be in direct contact
with the amide group.[32−34] The creation of such a cation–amide pair induces
a red-shift in the amide I vibration with respect to the frequency
of this mode in the gas phase, but this red-shift is smaller than
the red-shift that results from the formation of hydrogen bonds with
water molecules. In a previous study, calcium was found to bind to
the carbonyl oxygen in a collinear fashion, displacing both water
molecules,[32] thus corroborating that the
observed blue-shift of the amide vibration results from the binding
of calcium ions.At calcium concentrations below 150 mM, there
is no significant difference between the linear absorption spectra
measured with and without added salt. Nevertheless, based on previous
reports, we do expect a significant effect of calcium ions on the
hyaluronan structure already in this low-concentration regime. We
studied the molecular-scale effect of calcium at low concentrations
with 2DIR spectroscopy. 2DIR is a nonlinear technique in which molecular
vibrations are excited from the ground state (n =
0) to the first excited level (n = 1) with an intense
femtosecond mid-infrared light pulse (pump pulse). This excitation
leads to a change of the absorption of the excited and other vibrations
that we probe with a second, weaker, broadband, femtosecond mid-infrared
light pulse (probe pulse). The absorption change Δα measured
with 2DIR is proportional to the square of the vibrational cross section,
σ (Δα ∼ σ2), while in linear
infrared spectroscopy, the signal is linearly proportional to the
vibrational cross section (α ∼ σ). Therefore, 2DIR
is ideally suited to distinguish species with high cross sections
and low concentrations (e.g., molecular vibrations
of amide and carboxylate groups) from a background of species with
low cross sections and high concentrations (e.g.,
molecular vibrations of water). In Figure a, we present 2DIR spectra measured for a
hyaluronan solution with 0 and 25 mM calcium ions (Figure S1 shows additional data spanning from 0 to 300 mM).
In both spectra, we observe a strong signal when exciting at a pump
frequency of 1607 cm–1, which extends to higher
probe frequencies and shows a shoulder at 1630 cm–1. The peak and the shoulder colored in blue represent a decrease
in absorption due to bleaching of the fundamental n = 0 to n = 1 transitions of the νant and νAM.I vibrations, respectively. The signals
at lower probe frequencies colored in red represent the induced absorption
of the n = 1 to n = 2 transition.
Upon addition of calcium ions, we observe an enhanced absorption at
higher frequencies (indicated by the arrow in Figure b around 1660 cm–1), which
can be seen more clearly in the lower part of Figure b, where we show the difference between the
two slices taken along the diagonal of the bleach (also shown in Figure S1), illustrating the enhanced absorption.
Figure 2
(a) 2DIR
spectra of hyaluronan at a concentration of 20 mg/mL in
water containing 0 (left) and 25 mM (right) calcium ions. The waiting time between the pump and probe pulse
was 0.3 ps. The yellow rectangles indicate the regions
with the largest changes in absorption. (b) Top: transient absorption
2DIR signals taken along the diagonal slice (dashed line: guideline for the eye set at 2DIR signal equal to 0) of the bleach
in (a). Bottom: differential spectrum obtained by subtracting the
spectrum measured for a solution without calcium (0 mM) from the spectrum
of a solution with 25 mM calcium ions. (c) Fraction of complexed amide
groups as a function of calcium concentration. The data (symbols
with error bars) are fitted with a model that includes an
increasing energy penalty with increasing occupation of the amide
groups (see main text and Supporting Information Methods for details). The mean values and error bars (which represent
the standard deviation) were obtained by averaging over three different
experiments. (d) Illustration of the complex formed. The gray
dashed lines show the bidentate binding of the carboxylate
anion group to Ca2+.
(a) 2DIR
spectra of hyaluronan at a concentration of 20 mg/mL in
water containing 0 (left) and 25 mM (right) calcium ions. The waiting time between the pump and probe pulse
was 0.3 ps. The yellow rectangles indicate the regions
with the largest changes in absorption. (b) Top: transient absorption
2DIR signals taken along the diagonal slice (dashed line: guideline for the eye set at 2DIR signal equal to 0) of the bleach
in (a). Bottom: differential spectrum obtained by subtracting the
spectrum measured for a solution without calcium (0 mM) from the spectrum
of a solution with 25 mM calcium ions. (c) Fraction of complexed amide
groups as a function of calcium concentration. The data (symbols
with error bars) are fitted with a model that includes an
increasing energy penalty with increasing occupation of the amide
groups (see main text and Supporting Information Methods for details). The mean values and error bars (which represent
the standard deviation) were obtained by averaging over three different
experiments. (d) Illustration of the complex formed. The gray
dashed lines show the bidentate binding of the carboxylate
anion group to Ca2+.We observe a significantly increased absorption on the blue side
of the amide vibration peak, already at a calcium concentration of
25 mM. As with the linear absorption spectra, we assign this enhanced
absorption to the complexation of the amide carbonyl to the calcium
ion, which we will indicate as νAMI-Ca. We fit the 2DIR data with three Gaussian-shaped peaks to
extract the relative area of the νAMI-Ca amide band at different concentrations of calcium ions. In
this fit, we used two Gaussian-shaped peaks to describe the νant and νAM.I vibrational bands in the absence
of calcium and a third Gaussian-shaped peak to describe νAMI-Ca2+ (see Supporting Information Methods for details). The central frequencies and the widths of
the three bands were global parameters in the fit, meaning they were
fixed at all studied calcium concentrations, and only the amplitudes
of the three bands were allowed to be different at different calcium
concentrations. Examples of the fits are reported in Figures S2,S3. We assume that νAMI-Ca and νAM.I have the same cross section,
and thus, the fraction of amide groups bonded to calcium ions follows
directly from the areas of the νAM.I and νAMI-Ca bands (Figure c). We observe that at a low calcium concentration
of 10 mM, a significant fraction of amide groups is already bonded
to calcium ions. Because of limited experimental sensitivity, measurements
at physiological calcium conditions (∼1–2 mM) were not
possible. The fraction of amide bonded groups rises quickly with increasing
calcium concentration but effectively saturates at a fraction of ∼10–15
mol % of N-acetylglucosamine.The observed
saturation implies that the binding between Ca2+ and hyaluronan
is best described with a model that accounts
for a high affinity for calcium ions at low concentrations but includes
an energetic penalty for further binding upon complex formation. This
energy penalty depends on the fraction of formed complexes and can
be accounted for by using an expression for the association equilibrium
constant that contains an exponential term with a constant energy Ep (normalized by the thermal energy, kbT), weighted by the fraction
of occupied binding sites fwithHere, [Ca2+]
is the concentration of free calcium ions, and [HA] and [Ca2+HA] are the concentrations of unoccupied and occupied Ca2+ binding sites on HA (assuming one binding site per HAdisaccharide),
respectively. Using [Ca2+] + [Ca2+HA] = [Ca2+], where [Ca2+] is the total concentration of calcium ions
in the solution and the index i runs over all concentrations
investigated, and [HA] + [Ca2+HA] = [HA]0, where
[HA]0 is the total concentration of binding sites (i.e., disaccharides); we can rewrite the
equilibrium expression 1 aswhere x = [Ca2+HA]. Solving eq for x and using expression 2, we obtainTo extract the zero-concentration binding constant Ka,H and the energy penalty Ep, we globally minimizewhere
the fexp([Ca2+]) values are obtained
from the 2DIR experiments. The f([Ca2+]) values follow from solving the coupled eqs and 4 (see Supporting Information Methods for
details), where we fit the fraction of bonded amide. We obtain Ka,H = 7 ± 2 M–1 and Ep = 30 ± 5 kbT. The result of the fit is shown in Figure c. This binding constant
is significantly higher than the binding constants of the separate
amide or carboxylate anion groups to calcium. As reported in the Supporting Information Methods, we find that
for N-acetylglucosamine, KA = 0.013 ± 0.05 M–1 (Figure S9), and for glucuronic acid, KA = 1.2 ± 0.2 M–1 (Figure S10).
Effect of Calcium Ions on the Persistence
Length of HA
To assess the effect of ions on the persistence
length of HA at the
level of individual chains, we devised an atomic force microscopy
(AFM) assay to probe the stretching of individual HA chains under
tensile force, as schematically illustrated in Figure a (see Supporting Information Methods for details). Force spectroscopy with polymer chains benefits
from a uniform population of molecules with well-defined characteristics.
Here, we made quasi-monodisperse (i.e., size distribution
approaching the ideal) HA polymers with a “handle” only
at a single specified point. In the polysaccharide realm, our HA probe
is much more homogeneous than previous naturally occurring and semisynthetic
preparations.[35]
Figure 3
(a) Illustration of the
setup to measure the persistence length
of HA by single-molecule force spectroscopy: HA polysaccharide chains
(red; MW = 647 kDa) were grafted via their nonreducing end to an AFM tip; extracellular domains
of the HA receptor CD44 were anchored via their C-terminal
end to a planar support and served as baits to capture HA chains.
(b) Representative force curves obtained for stretching a single HA
chain in CaCl2 (red curve) and NaCl (black curve; offset
by 100 pN along the y-axis for clarity). Except for
a region of nonspecific binding at small separations (<50 nm),
the data are well fit by the WLC model (blue curves). (c) Histograms
of persistence lengths Lp determined from
WLC model fits for CaCl2 (red bars) and NaCl (black bars).
These are well fit by Gaussian-shaped curves (lines in matching colors),
giving mean and standard deviations of Lp = 3.2 ± 1.0 nm in NaCl and 1.7 ± 0.7 nm in CaCl2. Conditions: retract velocity of 1 μm/s, 150 mM NaCl or 50
mM CaCl2.
(a) Illustration of the
setup to measure the persistence length
of HA by single-molecule force spectroscopy: HApolysaccharide chains
(red; MW = 647 kDa) were grafted via their nonreducing end to an AFM tip; extracellular domains
of the HA receptor CD44 were anchored via their C-terminal
end to a planar support and served as baits to capture HA chains.
(b) Representative force curves obtained for stretching a single HA
chain in CaCl2 (red curve) and NaCl (black curve; offset
by 100 pN along the y-axis for clarity). Except for
a region of nonspecific binding at small separations (<50 nm),
the data are well fit by the WLC model (blue curves). (c) Histograms
of persistence lengths Lp determined from
WLC model fits for CaCl2 (red bars) and NaCl (black bars).
These are well fit by Gaussian-shaped curves (lines in matching colors),
giving mean and standard deviations of Lp = 3.2 ± 1.0 nm in NaCl and 1.7 ± 0.7 nm in CaCl2. Conditions: retract velocity of 1 μm/s, 150 mM NaCl or 50
mM CaCl2.For the single chain
force spectroscopy experiments, in brief,
HApolysaccharide chains were anchored through a thiol handle (SH-HA);
a sulfhydryl group was site-specifically introduced at the nonreducing
end (a difficult or impossible location for all previous syntheses
with HApolysaccharides because of the terminus’ relative lack
of unique chemical reactivity in contrast to the reducing end) to
a gold-coated AFM probe. The AFM probe was brought into contact with
a planar support displaying the HA receptor CD44, which acted as a
bait to capture a HA chain dangling from the AFM tip. Pulling the
AFM probe away from the planar support then generated a tensile force
that was monitored as a function of the probe-support distance, as
exemplified in Figure b. Care was taken to adjust the surface densities of HA and CD44
such that the rupture of individual HA·CD44 bonds, and thus,
the stretching of individual HA chains, could be resolved (Figure S4). The force versus extension curves could be well fitted with the worm-like chain (WLC)
model (Figure b; see
also Supporting Information Methods for
details), as expected for flexible and sufficiently long polymer chains.
Histograms of the persistence lengths Lp extracted from these fits (Figure c) show that calcium ions decrease the persistence
length of HA. At physiological concentrations of monovalent salt (150
mM NaCl), we found Lp = 3.2 ± 1.0
nm, in reasonable agreement with previous work.[36] In the presence of 50 mM CaCl2, the persistence
length was reduced almost twofold, to 1.7 ± 0.7 nm. Such a marked
decrease in persistence length, or equivalently, increase in chain
flexibility, indicates that calcium ions strongly affect the molecular
conformation of hyaluronan.
Effect of Calcium Ions on the Molecular Conformation
of Hyaluronan
To understand why calcium condensation causes
an increased chain
flexibility, we performed force field-based MD simulations with atomistic
resolution and an explicit description of the solvent molecules. We
performed MD simulations of aqueous solvated HA at a concentration
of 50 mM CaCl2, as used in the AFM experiments. We used
specialized and previously tested force field parameters for a short
HA oligomer dissolved in NaCl and CaCl2 solvent environments.
We employed two different sets of parameters for Ca2+,
referred to as CaCl2-Deublein and CaCl2-OPLS
(see Supporting Information Methods for
details) because the treatment of divalent cations is known to be
challenging at the classical, that is, force field, level of theory.[32,37] We ran 200 ns of unbiased MD simulations of HA oligomers with a
length of 8 disaccharides, starting from a straight-chain state, that
is, without chain bending, in the presence of either calcium or sodium
ions. The last 50 ns were used for analysis, in particular, to probe
the effect of the cations on the structure and dynamics of the hydrogen
bonds within the HAoligosaccharide.In Figure a, we show the structure of the oligomer,
in which we also indicate the five studied hydrogen bonds (labeled
A to E). In addition, we also studied the geometry of the complex
formed with the cation (labeled F). In Figure b, we show 2D histograms of the donor–acceptor
distances and angles of the hydrogen bonds A to E and the amide/carboxylate/cation
complex in a NaCl environment. Strong hydrogen bonds are characterized
by donor–acceptor distances shorter than 3 Å and angles
larger than 2.5 rad,[38] the latter implying
a high degree of alignment between the acceptor, the hydrogen, and
the donor.
Figure 4
(a) Key hydrogen bonds (labeled A to E) between adjacent monosaccharides
along the hyaluronan chain. (b) 2D histograms of the hydrogen-bond
distances and angles (labeled A to E) and of the cation–amide
(O2N) −carboxylate (O6A/B) complex (labeled F). Histograms
A to E have a color bar range from 0 to 0.4 normalized units. Histogram
F has a color bar range from 0 to 0.05 normalized units. The 2D histograms
for the CaCl2-OPLS and CaCl2-Deublein environments
are presented in Figure S5.
(a) Key hydrogen bonds (labeled A to E) between adjacent monosaccharides
along the hyaluronan chain. (b) 2D histograms of the hydrogen-bond
distances and angles (labeled A to E) and of the cation–amide
(O2N) −carboxylate (O6A/B) complex (labeled F). Histograms
A to E have a color bar range from 0 to 0.4 normalized units. Histogram
F has a color bar range from 0 to 0.05 normalized units. The 2D histograms
for the CaCl2-OPLS and CaCl2-Deublein environments
are presented in Figure S5.In Figure , we
show the changes in the 2D histograms (blue for increasing, red for
decreasing) when NaCl is replaced by CaCl2. For contacts
A to E, we observe positive peaks at longer distances and smaller
angles, indicating a weakening of these hydrogen bonds. An exception
is hydrogen bond D, which, in addition to some shift to longer distances
and smaller angles, also shows a small positive peak at a distance
of 3 Å and an angle of 2.8 rad. The largest difference is observed
for the complex F. The Ca2+ cations form close contacts
with the carboxylate (<3 Å) and both close (<3 Å)
and far (>3 Å) contacts with the amide. The presence of close
contacts between the cation and the amide group agrees with the IR
and 2DIR experimental observation that, upon addition of calcium,
amide groups experience dehydration because of the formation of a
direct bond between amideoxygen and the divalent ions (Figures and 2). The positive change at a distance of ∼10 Å observed
for both the amide and the carboxylate groups can be explained from
cations located on neighboring monomers. The MD results thus confirm
that Ca2+ ions have a high propensity to bind to the carboxylate
and amide groups and show that this binding results in a weakening
of the intramolecular hydrogen bonds of hyaluronan.
Figure 5
Differential 2D histograms
for contacts A to F (cf.Figure a), generated
by subtracting the histograms for hyaluronan in the NaCl environment
(Figure b) from histograms
for hyaluronan in the CaCl2-OPLS environment (Figure S5a). Blue indicates an increase in Ca2+ compared to Na+, and red indicates a decrease.
The differential 2D histograms obtained for the CaCl2-Deublein
environment are presented in Figure S6a.
Differential 2D histograms
for contacts A to F (cf.Figure a), generated
by subtracting the histograms for hyaluronan in the NaCl environment
(Figure b) from histograms
for hyaluronan in the CaCl2-OPLS environment (Figure S5a). Blue indicates an increase in Ca2+ compared to Na+, and red indicates a decrease.
The differential 2D histograms obtained for the CaCl2-Deublein
environment are presented in Figure S6a.Table shows the
probabilities of the formation of close contacts between the cation
and the amide or the carboxylate group, or with both groups. For both
force fields of Ca2+, we find that the CaCl2 environment yields much greater probabilities of close contacts
than the NaCl environment. The CaCl2-OPLS and CaCl2-Deublein yield similar values for the probability of close
contacts with the amide (O2N; 17 and 18%, respectively), which is
larger than the 5–10% extracted from the 2DIR experiments (Figure c). Such discrepancy
may arise because of the force field choice and/or because the cross
section of the amide vibrational band may change upon formation of
a bond with the calcium ion. In Table , we also observe that the probabilities of close contacts
between the cation and the carboxylate (O6A/B) differ between the
two Ca2+ force fields. Previous literature reports that
OPLS overestimates the Ca2+ carboxylate affinity[39] and points to CaCl2-Deublein being
more realistic. In Figure S5, we show 2D
histograms of the different hydrogen bond lengths and angles obtained
with CaCl2-Deublein and CaCl2-OPLS.
Table 1
Probability (±One Standard Deviation)
of Close Contact (<3 Å) of Na+ or Ca2+ Cations with the Carboxyl (O6A/B) or Amide (O2N) Oxygens, or with
Both Oxygens Simultaneously (O6A/B & O2N)
probability of close
contact with the cation
O2N (%)
O6A/B (%)
O2N and O6A/B (%)
HA in NaCl
1.8 ± 0.7
1.1 ± 0.7
0.3 ± 0.3
HA in CaCl2-OPLS
17.2 ± 1.9
42.9 ± 0.0
17.2 ± 1.9
HA in CaCl2-Deublein
18.1 ± 3.8
25.6 ± 10.1
9.9 ± 8.5
The time-averaged hyaluronan end-to-end chain length remained around
70 Å for all unbiased MD trajectories starting with a straight
chain configuration (Figure S7). This is
only slightly shorter than the contour length of the HAoligosaccharide
(80 Å) and suggests that large deformation events do not occur
within the computational time scale and for this relatively small
polymer size. In order to estimate the effect of Ca2+ on
the flexibility of hyaluronan, we calculated the bending free energy
of the same HAoligosaccharide in NaCl, CaCl2-Deublein,
and CaCl2-OPLS environments. This was achieved by means
of a variation of the constrained MD method[40] (see Supporting Information Methods for
details). The resulting bending free energy profiles, spanning end-to-end
lengths from a slightly stretched (compared to the time-average length)
hyaluronan oligosaccharide (75 Å) to a half-bent U-shaped one
(35 Å), are shown in Figure a. The two environments with Ca2+ are consistent
with each other and present significantly lower free energies of flexed
configurations than the Na+ environment, indicating a higher
flexibility of hyaluronan in the presence of Ca2+. For
flexible polymers, the bending free energy is linearly related to
the persistence length.[41] This proportionality
enables a quantitative comparison of the MD simulation results with
the experimental force spectroscopy results. The free energy of the
U-shaped bent HA decreases by approximately 40% from 4.96 ± 0.73
kcal/mol in NaCl to 3.04 ± 0.63 kcal/mol in CaCl2-OPLS
(or by 35% to 3.24 ± 0.87 kcal/mol in CaCl2-Deublein).
This reduction agrees with the approximately twofold decrease in persistence
length observed by AFM (Figure c).
Figure 6
(a) Bending free energy profile of hyaluronan for the three different
simulation environments described in the text. The shaded regions
refer to one standard deviation, as determined from a blocking analysis
(see Supporting Information Methods, Figure S8 and Table S1). (b) Visualization of the amide/carboxylate/cation complex rendered
by averaging atomic positions during the last 25 ns of the CaCl2-OPLS run constrained at an end-to-end length of 35 Å.
The picture is centered at the middle of the chain. The calcium is
represented according to its van der Waals radius. (c) Differential
2D histograms of the distances and angles in key hyaluronan inter-monosaccharide
hydrogen bonds (labeled A to E; cf.Figure a) and in the cation–amide
(O2N)–carboxylate (O6A/B) complex (labeled F) generated by
subtracting histograms obtained in the NaCl simulation environment
from histograms obtained in the CaCl2-OPLS simulation environment,
with both systems constrained at an end-to-end length of 35 Å.
The differential 2D histogram obtained in the CaCl2-Deublein
environment is presented in Figure S6b.
(a) Bending free energy profile of hyaluronan for the three different
simulation environments described in the text. The shaded regions
refer to one standard deviation, as determined from a blocking analysis
(see Supporting Information Methods, Figure S8 and Table S1). (b) Visualization of the amide/carboxylate/cation complex rendered
by averaging atomic positions during the last 25 ns of the CaCl2-OPLS run constrained at an end-to-end length of 35 Å.
The picture is centered at the middle of the chain. The calcium is
represented according to its van der Waals radius. (c) Differential
2D histograms of the distances and angles in key hyaluronan inter-monosaccharidehydrogen bonds (labeled A to E; cf.Figure a) and in the cation–amide
(O2N)–carboxylate (O6A/B) complex (labeled F) generated by
subtracting histograms obtained in the NaCl simulation environment
from histograms obtained in the CaCl2-OPLS simulation environment,
with both systems constrained at an end-to-end length of 35 Å.
The differential 2D histogram obtained in the CaCl2-Deublein
environment is presented in Figure S6b.In Figure c, the
differences in the five key hydrogen bonds are analyzed for the bent
configuration with an end-to-end length of 35 Å for both CaCl2-OPLS and NaCl. There is a general weakening of all contacts,
even more considerable than the weakening observed for the unconstrained
chain in Figure .
Contacts B to E shift to either longer distances (>4 Å) or
smaller
angles (<2 rad), showing a clear weakening of these hydrogen bonds.
Contact A is the only hydrogen bond with a small positive change at
close distances. The bending is thus accompanied by a weakening of
most intramolecular hydrogen bonds.
Discussion
The
2DIR and MD results show that the HA polymer chains bind calcium
ions at millimolar concentrations, leading to the formation of specific
calcium complexes with amide and carboxylate groups of adjacent saccharide
units. The force spectroscopy measurement and MD simulations consistently
show an increase in hyaluronan flexibility in the presence of calcium.
The combination of the three techniques provides a direct link between
the molecular mechanism of calcium binding and its effect on the hyaluronan
chain mechanics.The 2DIR results show that the association
constant of Ca2+ and hyaluronan has a relatively high value
of 7 M–1 at low Ca2+ concentrations.
This association constant
is much higher than the association constant for the binding of Ca2+ to amide groups, for which an association constant of ∼0.1
M–1 has been reported.[33] We observed a similar association constant for Ca2+ and N-acetylglucosamine (0.013 ± 0.05 M–1; see Supporting Information Methods and Figure S9). This difference can be explained
from the fact that in case of hyaluronan, the Ca2+ not
only binds to an amide group but at the same time to a nearby carboxylate
anion group. The binding with the latter group will be rather strong,
thus explaining the much larger association constant of Ca2+ to hyaluronan compared to isolated amide groups.It is also
interesting to compare the association constant of Ca2+ and hyaluronan with the second saccharide unit that constitutes
the building block of hyaluronan, glucuronic acid. For glucuronic
acid, we found an association constant of 1.2 ± 0.2 M–1 (Supporting Information Methods and Figure S10), which is similar to the association
constants found for complexes of simple acids and calcium.[42] The association constant of glucuronic acid
and Ca2+ is thus approximately six times smaller than that
of hyaluronan and Ca2+. This finding indicates that in
hyaluronan, the relative position and orientation of the amide group
of N-acetylglucosamine and the carboxylate anion
of glucuronic acid lead to a highly favorable binding of Ca2+.The strong affinity of hyaluronan for calcium may also be
because
of the size-charge requirements of the calcium ions. Because of its
larger diameter compared to other cations, such as magnesium, the
calcium ion binds well to less polar oxygens than wateroxygens. Hence,
the favorable inner chelation with other less polar groups, such as
the amideoxygen in this case, greatly increases the stability of
the calcium complex.[43−46] It is likely that the restrained conformational fluctuations and
the size-charge requirements add up synergistically, explaining the
high affinity of hyaluronan to calcium. Interestingly, we find that
the high affinity of hyaluronan for Ca2+ rapidly drops
when the concentration of Ca2+ increases, that is, we observe
that the occupation of the binding sites saturates at an occupied
fraction of ∼10–15%. This strong saturation is not observed
for glucuronic acid or N-acetylglucosamine on their
own. It thus appears that the binding of a calcium ion at a particular
binding site of HA hinders the binding of other Ca2+ ions
at nearby binding sites. This hindrance may be due to a conformational
change of the hyaluronan induced by calcium binding, with the result
that the neighboring binding sites no longer possess the highly favorable
conformation of the carboxylate and amide groups that caused the initial
high association constant of 7 M–1. This explanation
is supported by MD simulations that show that the binding of Ca2+ induces a weakening of the hydrogen bonds and increases
the flexibility of the polymer chain. The increase of the flexibility,
which is also borne out by the force measurements, implies that the
conformational fluctuations increase in amplitude. As a result, the
time fraction in which the conformation of the binding site is favorable
for binding Ca2+ is reduced, thereby decreasing the association
constant. An additional contribution to the decrease of the affinity
for Ca2+ may originate from electrostatic repulsion between
Ca2+ ions at neighboring units.
Conclusions
In
this work, we have studied the interaction between hyaluronanpolymers and Ca2+ ions with a combination of linear infrared
spectroscopy, two-dimensional infrared spectroscopy, molecular-scale
force measurements, and MD simulations. We find that hyaluronan binds
Ca2+ with an affinity that is unusually high for inorganic
ions, with an association constant of 7 ± 2 M–1 in the limit of millimolar Ca2+ concentrations. This
association constant is ∼6 times higher than that of glucuronic
acid, which contains the same carboxylate anion motif as hyaluronan.
This finding, as well as our spectroscopic data, indicates that the
relative position and orientation of the amide group and the carboxylate
anion groups of hyaluronan are highly favorable for binding of Ca2+. The MD simulations confirm that hyaluronan has a high affinity
for Ca2+ ions. We also observe a strong saturation of the
binding of Ca2+ to hyaluronan at higher Ca2+ concentrations. This saturation effect can be well modeled with
a free-energy penalty that scales with the fraction of bound Ca2+. The decreased binding affinity can be explained from the
increase of the flexibility of the hyaluronan polymers upon the binding
of Ca2+, as shown by the MD simulations. An additional
contribution to the saturation effect may come from electrostatic
repulsion, that is, the positive charge of Ca2+ repels
the binding of other positive charges at nearby binding locations.The force measurements show that the binding of Ca2+ leads to a large decrease of the persistence length of the hyaluronanpolymers, which amounts to ∼50% at a calcium concentration
of 50 mM. The MD simulations explain this decrease of the persistence
length in terms of the weakening of several of the intramolecular
hydrogen bonds, induced by the formation of the complex of Ca2+ with the carboxylate and amide groups.In summary,
by using a multitechnique approach, we show that a
selective and localized cation binding process takes place between
calcium and hyaluronan polymers, leading to the formation of specific
complexes. Here, we provide a detailed molecular picture of ion condensation
on a polymer, highlighting the severe effect of few, selective and
confined electrostatic interactions on the rigidity of a polyelectrolyte
chain. As the extracellular matrix contains calcium, this ion’s
effect on the structure of HA chains and thus their binding to hyaladherin
proteins and receptors should be considered. Moreover, given the vast
employment of glycosaminoglycans to devise hydrogels with tailored
applications, such as drug delivery, our findings may lead to novel
ideas for creating smart materials by exploiting the unique structural
properties that can be tuned by the addition of specific ions.
Authors: Eva Pluhařová; Marcel D Baer; Christopher J Mundy; Burkhard Schmidt; Pavel Jungwirth Journal: J Phys Chem Lett Date: 2014-06-16 Impact factor: 6.475
Authors: Venkata S Meka; Manprit K G Sing; Mallikarjuna R Pichika; Srinivasa R Nali; Venkata R M Kolapalli; Prashant Kesharwani Journal: Drug Discov Today Date: 2017-07-03 Impact factor: 7.851
Authors: Michele M Temple-Wong; Shuwen Ren; Phu Quach; Bradley C Hansen; Albert C Chen; Akihiko Hasegawa; Darryl D D'Lima; Jim Koziol; Koichi Masuda; Martin K Lotz; Robert L Sah Journal: Arthritis Res Ther Date: 2016-01-21 Impact factor: 5.156