| Literature DB >> 33581146 |
Jenna Los1, Charlotte A Gaydos2, Cynthia L Gibert3, Geoffrey J Gorse4, Jacquelyn Lykken5, Ann-Christine Nyquist6, Connie S Price7, Lewis J Radonovich8, Susan Rattigan9, Nicholas Reich10, Maria Rodriguez-Barradas11, Michael Simberkoff12, Mary Bessesen13, Alexandria Brown10, Derek A T Cummings9, Trish M Perl14.
Abstract
BACKGROUND: Health care personnel (HCP) working in outpatient settings routinely interact with patients with acute respiratory illnesses. Absenteeism following symptom development and lack of staff trained to obtain samples limit efforts to identify pathogens among infected HCP.Entities:
Keywords: Diagnostics; Feasibility; Influenza; Self-collection; Surveillance
Year: 2021 PMID: 33581146 PMCID: PMC7874979 DOI: 10.1016/j.ajic.2021.02.001
Source DB: PubMed Journal: Am J Infect Control ISSN: 0196-6553 Impact factor: 2.918
Total count, ratio, and viral capture effectiveness (VCE) for all collected samples, positive samples, and pathogens identified across all influenza/respiratory virus seasons. Samples are evaluated by research assistant-obtained swabs (RA) and those self-collected (take-home kits, THK)
| Total count | % of Total pathogens identified | Viral capture effectiveness (VCE) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Type | THK | RA | Total | THK | RA | Total | THK | RA | Total | ||
| Total symptomatic samples collected | 439 | 3028 | 3467 | ||||||||
| 12.7% | 87.3% | ||||||||||
| Total symptomatic samples positive for acute respiratory illnesses (ARIs) | 177 | 727 | 904 | 40.3% | 24.0% | 26.1% | <.001 | ||||
| 19.6% | 80.4% | ||||||||||
| Total pathogens identified | 181 | 746 | 927 | 41.2% | 24.6% | 26.7% | <0.001 | ||||
| 19.5% | 80.5% | ||||||||||
| Adenovirus | 2 | 7 | 9 | 1.1% | 0.9% | 1.0% | 0.5% | 0.2% | 0.3% | ||
| Coronavirus (HKU1, NL63, OC43, 229E) | 54 | 274 | 328 | 29.8% | 36.7% | 35.4% | 12.3% | 9.0% | 9.5% | <.05 | |
| Influenza A & B | 54 | 106 | 160 | 29.8% | 14.2% | 17.3% | <0.001 | 12.3% | 3.5% | 4.6% | <.001, |
| Metapneumovirus | 3 | 38 | 41 | 1.7% | 5.1% | 4.4% | 0.7% | 1.3% | 1.2% | ||
| Parainfluenza Viruses (PIV) 1-4 | 4 | 6 | 10 | 2.2% | 0.8% | 1.1% | 0.9% | 0.2% | 0.3% | <.05 | |
| Rhino/Enteroviruses | 45 | 233 | 278 | 24.9% | 31.2% | 30.0% | 10.3% | 7.7% | 8.0% | ||
| Respiratory Syncytial Virus (RSV) | 19 | 82 | 101 | 10.5% | 11.0% | 10.9% | 4.3% | 2.7% | 2.9% | ||
P-value refers to take-home kit (THK) vs research assistant-obtained (RA) samples.
Total and percent symptomatic samples from all swabs collected.
Total and percent lab-confirmed positive samples from all symptomatic swabs collected.
Total and percent pathogens identified from all symptomatic samples collected. Each sample and unique pathogen identified from a single sample count individually in the table (i.e. some samples diagnosed with >1 pathogen).
P < .05, RA-obtained vs. Total samples.
Fig 1Ratio of pathogens by collection method. (A) Relative proportion of research assistant-obtained (RA) and self-collected (take-home kits, THK) total symptomatic samples collected (left panel) and total positive symptomatic samples (right panel). (B) Relative proportion of positive and negative samples from swabs collected (top panels) and distribution of identified pathogens from positive samples (bottom panels) for all self-collected (THK) swabs (black), RA-obtained swabs (dark gray), and all swabs collected (light grey).
Demographics of person-seasons with a symptomatic swab, evaluated for each person-season by those receiving only research assistant-obtained swabs (RA) versus those ever using self-collection (take-home kits, THK)
| RA only | THK ever | |
|---|---|---|
| Total | 1891 | 401 |
| Sex | ||
| Male | 257 (13.6) | 54 (13.5) |
| Female | 1634 (86.4) | 347 (86.5) |
| Race/Ethnicity | ||
| Asian | 150 (7.9) | 28 (7.0) |
| Black | 516 (27.3) | 49 (12.2) |
| Caucasian | 988 (52.2) | 284 (70.8) |
| Native Hawaiian/Pacific Islander | 4 (0.2) | 2 (0.5) |
| Native Person | 14 (0.7) | 4 (1.0) |
| No Race Reported | 52 (2.7) | 4 (1.0) |
| Other | 167 (8.8) | 30 (7.5) |
| Hispanic or Latino | 341 (18.0) | 39 (9.7) |
| Age (in y) | ||
| 18-29 | 304 (16.1) | 53 (13.2) |
| 30-39 | 581 (30.7) | 142 (35.4) |
| 40-49 | 454 (24.0) | 98 (24.4) |
| 50-59 | 427 (22.6) | 66 (16.5) |
| 60-69 | 122 (6.5) | 42 (10.5) |
| 70+ | 3 (0.2) | 0 (0) |
| Influenza vaccination status | ||
| Vaccinated | 1549 (81.9) | 366 (91.3) |
| Not vaccinated | 330 (17.5) | 34 (8.5) |
| Job category | ||
| Administrative | 198 (10.5) | 29 (7.2) |
| Clinical support | 308 (16.3) | 41 (10.2) |
| Environmental/housekeeping/ support associate | 23 (1.2) | 4 (1.0) |
| Nurse | 782 (41.4) | 198 (49.4) |
| Other | 214 (11.3) | 38 (9.5) |
| Physician | 235 (12.4) | 63 (15.7) |
| Registration/reception | 90 (4.8) | 21 (5.2) |
| Social worker/pastoral care | 41 (2.2) | 7 (1.7) |
| Children's Colorado | 105 (5.6) | 64 (16.0) |
| DC VA | 156 (8.2) | 19 (4.7) |
| Denver Hospital | 411 (21.7) | 84 (20.9) |
| Denver VA | 137 (7.2) | 58 (14.5) |
| Houston VA | 193 (10.2) | 46 (11.5) |
| Johns Hopkins | 569 (30.1) | 116 (28.9) |
| NY VA | 320 (16.9) | 14 (3.5) |
| Patient population | ||
| Adults | 1098 (58.1) | 184 (45.9) |
| Pediatrics | 389 (20.6) | 116 (28.9) |
| Both | 404 (21.4) | 101 (25.2) |
The same participant could appear in both categories and multiple times in the RA category due to the nature of the study.
13 participant-seasons did not report influenza vaccination status.