Literature DB >> 33580316

Next-generation fluorescent nucleic acids probes for microscopic analysis of intracellular nucleic acids.

Akimitsu Okamoto1.   

Abstract

Fluorescence imaging of nucleic acids is a very important technique necessary to understand gene expression and the resulting changes in cell function. This mini-review focuses on sequence-specific fluorescence imaging of intracellular RNA and methylated DNA using fluorescent nucleic acid probes. A couple of functional fluorescent nucleic acid probes developed by our laboratory are introduced and the examples of their application to fluorescence imaging of intracellular nucleic acids are described.

Entities:  

Keywords:  Fluorescence; Methylated DNA; RNA; Single cell imaging; Synthetic nucleic acid

Year:  2019        PMID: 33580316      PMCID: PMC7818349          DOI: 10.1186/s42649-019-0017-1

Source DB:  PubMed          Journal:  Appl Microsc        ISSN: 2234-6198


  42 in total

1.  Molecular beacons: novel fluorescent probes.

Authors:  X Fang; J J Li; J Perlette; W Tan; K Wang
Journal:  Anal Chem       Date:  2000-12-01       Impact factor: 6.986

2.  Fluorescent H-aggregates of merocyanine dyes.

Authors:  Ulrich Rösch; Sheng Yao; Rüdiger Wortmann; Frank Würthner
Journal:  Angew Chem Int Ed Engl       Date:  2006-10-27       Impact factor: 15.336

3.  Detection of low-copy-number genomic DNA sequences in individual bacterial cells by using peptide nucleic acid-assisted rolling-circle amplification and fluorescence in situ hybridization.

Authors:  Irina Smolina; Charles Lee; Maxim Frank-Kamenetskii
Journal:  Appl Environ Microbiol       Date:  2007-02-09       Impact factor: 4.792

4.  Hybridization-sensitive on-off DNA probe: application of the exciton coupling effect to effective fluorescence quenching.

Authors:  Shuji Ikeda; Akimitsu Okamoto
Journal:  Chem Asian J       Date:  2008-06-02

Review 5.  ECHO probes: a concept of fluorescence control for practical nucleic acid sensing.

Authors:  Akimitsu Okamoto
Journal:  Chem Soc Rev       Date:  2011-06-10       Impact factor: 54.564

6.  Oxazole yellow dye interactions with short DNA oligomers of homogeneous base composition and their hybrids.

Authors:  L D Simon; K H Abramo; J K Sell; L B McGown
Journal:  Biospectroscopy       Date:  1998

7.  DNMT3B mutations and DNA methylation defect define two types of ICF syndrome.

Authors:  Y L Jiang; M Rigolet; D Bourc'his; F Nigon; I Bokesoy; J P Fryns; M Hultén; P Jonveaux; P Maraschio; A Mégarbané; A Moncla; E Viegas-Péquignot
Journal:  Hum Mutat       Date:  2005-01       Impact factor: 4.878

Review 8.  Cancer epigenetics comes of age.

Authors:  P A Jones; P W Laird
Journal:  Nat Genet       Date:  1999-02       Impact factor: 38.330

9.  An embryonic-like methylation pattern of classical satellite DNA is observed in ICF syndrome.

Authors:  M Jeanpierre; C Turleau; A Aurias; M Prieur; F Ledeist; A Fischer; E Viegas-Pequignot
Journal:  Hum Mol Genet       Date:  1993-06       Impact factor: 6.150

10.  Whole-mount MeFISH: a novel technique for simultaneous visualization of specific DNA methylation and protein/RNA expression.

Authors:  Hirosuke Shiura; Akimitsu Okamoto; Hiroyuki Sasaki; Kuniya Abe
Journal:  PLoS One       Date:  2014-04-22       Impact factor: 3.240

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  1 in total

1.  Non-destructive monitoring of 3D cell cultures: new technologies and applications.

Authors:  Marilisa Cortesi; Emanuele Giordano
Journal:  PeerJ       Date:  2022-05-12       Impact factor: 3.061

  1 in total

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