Literature DB >> 33579933

Granulovirus PK-1 kinase activity relies on a side-to-side dimerization mode centered on the regulatory αC helix.

Michael R Oliver1,2, Christopher R Horne3,4, Safal Shrestha5, Jeremy R Keown1,6, Lung-Yu Liang3,4, Samuel N Young3, Jarrod J Sandow3,4, Andrew I Webb3,4, David C Goldstone1, Isabelle S Lucet3,4, Natarajan Kannan5,7, Peter Metcalf8, James M Murphy9,10.   

Abstract

The life cycle of Baculoviridae family insect viruses depends on the viral protein kinase, PK-1, to phosphorylate the regulatory protein, p6.9, to induce baculoviral genome release. Here, we report the crystal structure of Cydia pomenella granulovirus PK-1, which, owing to its likely ancestral origin among host cell AGC kinases, exhibits a eukaryotic protein kinase fold. PK-1 occurs as a rigid dimer, where an antiparallel arrangement of the αC helices at the dimer core stabilizes PK-1 in a closed, active conformation. Dimerization is facilitated by C-lobe:C-lobe and N-lobe:N-lobe interactions between protomers, including the domain-swapping of an N-terminal helix that crowns a contiguous β-sheet formed by the two N-lobes. PK-1 retains a dimeric conformation in solution, which is crucial for catalytic activity. Our studies raise the prospect that parallel, side-to-side dimeric arrangements that lock kinase domains in a catalytically-active conformation could function more broadly as a regulatory mechanism among eukaryotic protein kinases.

Entities:  

Year:  2021        PMID: 33579933      PMCID: PMC7881018          DOI: 10.1038/s41467-021-21191-7

Source DB:  PubMed          Journal:  Nat Commun        ISSN: 2041-1723            Impact factor:   14.919


  67 in total

1.  Design of selective, ATP-competitive inhibitors of Akt.

Authors:  Kevin D Freeman-Cook; Christopher Autry; Gary Borzillo; Deborah Gordon; Elsa Barbacci-Tobin; Vincent Bernardo; David Briere; Tracey Clark; Matthew Corbett; John Jakubczak; Shefali Kakar; Elizabeth Knauth; Blaise Lippa; Michael J Luzzio; Mahmoud Mansour; Gary Martinelli; Matthew Marx; Kendra Nelson; Jayvardhan Pandit; Francis Rajamohan; Shaughnessy Robinson; Chakrapani Subramanyam; Liuqing Wei; Martin Wythes; Joel Morris
Journal:  J Med Chem       Date:  2010-06-24       Impact factor: 7.446

2.  Canonical sampling through velocity rescaling.

Authors:  Giovanni Bussi; Davide Donadio; Michele Parrinello
Journal:  J Chem Phys       Date:  2007-01-07       Impact factor: 3.488

3.  XDS.

Authors:  Wolfgang Kabsch
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-01-22

4.  RAF inhibitors prime wild-type RAF to activate the MAPK pathway and enhance growth.

Authors:  Georgia Hatzivassiliou; Kyung Song; Ivana Yen; Barbara J Brandhuber; Daniel J Anderson; Ryan Alvarado; Mary J C Ludlam; David Stokoe; Susan L Gloor; Guy Vigers; Tony Morales; Ignacio Aliagas; Bonnie Liu; Steve Sideris; Klaus P Hoeflich; Bijay S Jaiswal; Somasekar Seshagiri; Hartmut Koeppen; Marcia Belvin; Lori S Friedman; Shiva Malek
Journal:  Nature       Date:  2010-02-03       Impact factor: 49.962

5.  The conserved lysine of the catalytic domain of protein kinases is actively involved in the phosphotransfer reaction and not required for anchoring ATP.

Authors:  A C Carrera; K Alexandrov; T M Roberts
Journal:  Proc Natl Acad Sci U S A       Date:  1993-01-15       Impact factor: 11.205

6.  Distribution and phosphorylation of the basic protein P6.9 of Autographa californica nucleopolyhedrovirus.

Authors:  XiaoXiao Liu; Haizhou Zhao; Zhixin Fang; Meijin Yuan; Kai Yang; Yi Pang
Journal:  J Virol       Date:  2012-09-05       Impact factor: 5.103

7.  Deciphering key features in protein structures with the new ENDscript server.

Authors:  Xavier Robert; Patrice Gouet
Journal:  Nucleic Acids Res       Date:  2014-04-21       Impact factor: 16.971

8.  MolProbity: all-atom structure validation for macromolecular crystallography.

Authors:  Vincent B Chen; W Bryan Arendall; Jeffrey J Headd; Daniel A Keedy; Robert M Immormino; Gary J Kapral; Laura W Murray; Jane S Richardson; David C Richardson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-12-21

Review 9.  Design principles underpinning the regulatory diversity of protein kinases.

Authors:  Krishnadev Oruganty; Natarajan Kannan
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2012-09-19       Impact factor: 6.237

10.  Structure of the pseudokinase VRK3 reveals a degraded catalytic site, a highly conserved kinase fold, and a putative regulatory binding site.

Authors:  Eric D Scheeff; Jeyanthy Eswaran; Gabor Bunkoczi; Stefan Knapp; Gerard Manning
Journal:  Structure       Date:  2009-01-14       Impact factor: 5.006

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  1 in total

1.  The intracellular domains of the EphB6 and EphA10 receptor tyrosine pseudokinases function as dynamic signalling hubs.

Authors:  Lung-Yu Liang; Michael Roy; Christopher R Horne; Jarrod J Sandow; Minglyanna Surudoi; Laura F Dagley; Samuel N Young; Toby Dite; Jeffrey J Babon; Peter W Janes; Onisha Patel; James M Murphy; Isabelle S Lucet
Journal:  Biochem J       Date:  2021-09-17       Impact factor: 3.857

  1 in total

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