| Literature DB >> 33578541 |
Denghua Liu1, Rui Zhou2, Aiguo Zhou1.
Abstract
BACKGROUND: In osteosarcoma, the lung is the most common metastatic organ. Intensive work has been made to illuminate the pathogeny, but the specific metastatic mechanism remains unclear. Thus, we conducted the study to seek to find the key genes and critical functional pathways associated with progression and treatment in lung metastasis originating from osteosarcoma.Entities:
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Year: 2021 PMID: 33578541 PMCID: PMC7886415 DOI: 10.1097/MD.0000000000024471
Source DB: PubMed Journal: Medicine (Baltimore) ISSN: 0025-7974 Impact factor: 1.817
Figure 1Identification of differentially expressed genes (DEGs) in 2 gene expression omnibus datasets. (A) Volcano plot of DEGs in GSE14359. (B) Volcano plot of DEGs in GSE85537. Red, blue, and gray color represents the relatively high, low and equal expression of genes in the corresponding dataset, respectively. (C) Venn diagram of overlapping DEGs from the intersection of the two independent datasets.
Figure 2GO annotation and KEGG pathways enrichment analyses of the differentially expressed genes (DEGs). (A) Top 20 of the biological process of the DEGs. (B) Top 20 of the cytological components of the DEGs. (C) Top 20 of the molecular function of the DEGs. (D) KEGG signaling pathways of the DEGs. GO = Gene Ontology; KEGG = Kyoto Encyclopedia of Genes and Genomes.
Figure 3The protein-protein interaction network of DEGs. Upregulated genes are marked in red; downregulated genes are marked in blue.
Figure 4(A) The most key module of the protein-protein interaction network. (B) The biological process analyses of those genes involved in the key module.
The detailed information of hub genes.
| Gene symbol | Full name | Function |
| S-Phase kinase associated protein 2 | SKP2 encodes a substrate recognition component of a SCF (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complex, which mediates the ubiquitination and subsequent proteasomal degradation of target proteins involved in cell cycle progression, signal transduction, and transcription. | |
| Abnormal spindle microtubule assembly | ASPM encodes a centrosomal protein that plays an essential part in maintaining the normal function of the mitotic spindle and regulating neurogenesis. | |
| Topoisomerase (DNA) II alpha | TOP2A encodes a DNA topoisomerase that is essential in the regulation of DNA structure and transcription, and it is the direct molecular target of anthacyclines. | |
| Structural maintenance of chromosomes 2 | SMC2 encodes the central component of the condensin complex, which is required for conversion of interphase chromatin into mitotic-like condense chromosomes. | |
| Cell division cycle 25C | CDC25C encoded a tyrosine protein phosphatase that participated in regulating G2/M progression and mediating DNA damage repair | |
| Suppressor of cytokine signaling 3 | SOCS family proteins form part of a classical negative feedback system that mainly regulates cytokine signal transduction. | |
| Denticleless E3 ubiquitin protein ligase homolog | DTL encodes a substrate-specific adapter of a DCX (DDB1-CUL4-X-box) E3 ubiquitin-protein ligase complex required for cell cycle control, DNA damage response, and translesion DNA synthesis | |
| Epithelial cell transforming 2 | ECT2 is a guanine nucleotide exchange factor (GEF) of the Rho family members of small GTPases and essential for signal transduction pathways involved in the regulation of cytokinesis. | |
| Centromere protein N | CENPN is the vital component of the CENPA-NAC (nucleosome-associated) complex, which plays a central role in assembly of kinetochore proteins, mitotic progression and chromosome segregation | |
| PARP1 binding protein | PARPBP contributes to suppressing inappropriate homologous recombination, thereby playing a central role in DNA repair and the maintenance of genomic stability. |
Figure 5(A) The coexpression network of hub genes. (B) The expression differences of hub genes between lung metastasis group and nonmetastatic group.
Figure 6Survival analyses of hub genes in patients with osteosarcoma. P < .05 was considered statistically significant.
Figure 7Interaction network of hub genes and targeted miRNAs. Hub genes are presented in red circles, whereas targeted miRNAs are shown in blue circles.