| Literature DB >> 33577809 |
Francesco Baldo1, Nicolás M Suárez2, Andrew J Davison3, Davide Zanon4, Egidio Barbi5, Natalia Maximova6.
Abstract
BACKGROUND: Human cytomegalovirus (HCMV) remains an important cause of transplant-related morbidity and mortality. The incidence of HCMV recurrence in the donor seronegative (D-)/recipient seropositive (R+) group is significantly higher than in other serostatus combinations as a result of a lack of pre-existing HCMV-specific memory T-lymphocytes in the donor, coupled with the eradication of the recipient's cellular immunity due to the conditioning regimen. CASEEntities:
Keywords: Human cytomegalovirus; Hyperimmune plasma infusion; Post-transplant graft failure; Targeted immunotherapy
Mesh:
Substances:
Year: 2021 PMID: 33577809 PMCID: PMC9188265 DOI: 10.1016/j.antiviral.2021.105024
Source DB: PubMed Journal: Antiviral Res ISSN: 0166-3542 Impact factor: 10.103
Fig. 1Information on viremia, white blood cell (WBC) count, total serum IgG and antiviral therapy. Data on HCMV viremia is expressed in viral genome copies/mL (right Y-axis). Application and duration of antiviral treatments are represented by colored bars (yellow, anti-HCMV-specific Ig; red, foscarnet; blue, ganciclovir/valganciclovir). Chronological data (X-axis) are represented in days after the first transplant. The plasma sample analysed by high-throughput sequencing (HTS) is represented by a filled blue circle.
Overview of HTS data.
| Sample ID | TRI-SCT1 |
|---|---|
| Sample type | Plasma |
| Days after transplant | +19 |
| HCMV load (genome copies/mL) | 2100 |
| Data deposition (ENA project no.) | PRJEB38333 |
| Sequencing library (genome copies) | 1440 |
| Trimmed reads (no.) | 5,033,480 |
| HCMV reads (no.) | 936,773 |
| HCMV reads; % | 19 |
| Coverage depth (reads/nt) | 885 |
The sequence dataset was purged of human reads and deposited in the European Nucleotide Archive (ENA).
Reads mapped to the HCMV reference strain Merlin genome; HTS, high-throughput sequencing; nt, nucleotide.
Genotyping of hypervariable HCMV genes.