Literature DB >> 33576956

Evolutionary Algorithm based Ensemble Extractive Summarization for Developing Smart Medical System.

Chirantana Mallick1, Asit Kumar Das2, Janmenjoy Nayak3, Danilo Pelusi4, S Vimal5.   

Abstract

The amount of information in the scientific literature of the bio-medical domain is growing exponentially, which makes it difficult in developing a smart medical system. Summarization techniques help for efficient searching and understanding of relevant information from the medical documents. In the paper, an evolutionary algorithm based ensemble extractive summarization technique is devised as a smart medical application with the idea of hybrid artificial intelligence on natural language processing. We have considered the abstracts of the target article and its cited articles as the base summaries and a multi-objective evolutionary algorithm is applied for generating the ensemble summary of the target article. Each sentence of the base summaries is represented by a concept vector of the medical terms contained in it with the help of the Unified Modelling Language System (UMLS) tool which is widely used in various smart medical applications. These terms carry the key information of the sentence which is very useful to find out the semantic similarity among the sentences. Fitness functions of the evolutionary algorithm are mainly defined using clustering coefficient and sparsity index, the concepts of graph theory. After the convergence of the algorithm, the best solution of the final population gives the ensemble summary. Next, the semantic similarity of each sentence in the target article with the ensemble summary is calculated and the sentences which are most similar to the ensemble summary are considered as the summary of the target article. The method is applied to the articles available in the PubMed MEDLINE database system and experimental results are compared with some state of the art methods applied in the Bio-medical domain. Experimental results and comparative study based on the performance evaluation show that the method competes with some recently proposed summarization methods and outperforms others, which express the effectiveness of the proposed methodology. Different statistical tests have also been made to observe that the method is statistically significant.

Keywords:  Bio-Medical informatics; Clustering coefficient; Ensemble summary; Multi-objective evolutionary algorithm; Sparsity index; Supervised extractive summarization

Year:  2021        PMID: 33576956     DOI: 10.1007/s12539-020-00412-5

Source DB:  PubMed          Journal:  Interdiscip Sci        ISSN: 1867-1462            Impact factor:   2.233


  9 in total

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Authors:  Thomas C Rindflesch; Marcelo Fiszman
Journal:  J Biomed Inform       Date:  2003-12       Impact factor: 6.317

2.  Mayo clinical Text Analysis and Knowledge Extraction System (cTAKES): architecture, component evaluation and applications.

Authors:  Guergana K Savova; James J Masanz; Philip V Ogren; Jiaping Zheng; Sunghwan Sohn; Karin C Kipper-Schuler; Christopher G Chute
Journal:  J Am Med Inform Assoc       Date:  2010 Sep-Oct       Impact factor: 4.497

3.  An overview of MetaMap: historical perspective and recent advances.

Authors:  Alan R Aronson; François-Michel Lang
Journal:  J Am Med Inform Assoc       Date:  2010 May-Jun       Impact factor: 4.497

Review 4.  Summarization from medical documents: a survey.

Authors:  Stergos Afantenos; Vangelis Karkaletsis; Panagiotis Stamatopoulos
Journal:  Artif Intell Med       Date:  2005-02       Impact factor: 5.326

5.  Automatic summarization of MEDLINE citations for evidence-based medical treatment: a topic-oriented evaluation.

Authors:  Marcelo Fiszman; Dina Demner-Fushman; Halil Kilicoglu; Thomas C Rindflesch
Journal:  J Biomed Inform       Date:  2008-11-05       Impact factor: 6.317

6.  Structural semantic interconnections: a knowledge-based approach to word sense disambiguation.

Authors:  Roberto Navigli; Paola Velardi
Journal:  IEEE Trans Pattern Anal Mach Intell       Date:  2005-07       Impact factor: 6.226

Review 7.  Clinical information extraction applications: A literature review.

Authors:  Yanshan Wang; Liwei Wang; Majid Rastegar-Mojarad; Sungrim Moon; Feichen Shen; Naveed Afzal; Sijia Liu; Yuqun Zeng; Saeed Mehrabi; Sunghwan Sohn; Hongfang Liu
Journal:  J Biomed Inform       Date:  2017-11-21       Impact factor: 6.317

Review 8.  Text summarization in the biomedical domain: a systematic review of recent research.

Authors:  Rashmi Mishra; Jiantao Bian; Marcelo Fiszman; Charlene R Weir; Siddhartha Jonnalagadda; Javed Mostafa; Guilherme Del Fiol
Journal:  J Biomed Inform       Date:  2014-07-10       Impact factor: 6.317

9.  Summary statistics of size: fixed processing capacity for multiple ensembles but unlimited processing capacity for single ensembles.

Authors:  Mouna Attarha; Cathleen M Moore; Shaun P Vecera
Journal:  J Exp Psychol Hum Percept Perform       Date:  2014-04-14       Impact factor: 3.332

  9 in total

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