| Literature DB >> 33574325 |
David C Kochan1, Erin Winkler2, Noralane Lindor3, Gabriel Q Shaibi4, Janet Olson5, Pedro J Caraballo6, Robert Freimuth5, Joel E Pacyna7, Carmen Radecki Breitkopf7, Richard R Sharp7, Iftikhar J Kullo8.
Abstract
To inform the process of returning results in genome sequencing studies, we conducted a quantitative and qualitative assessment of challenges encountered during the Return of Actionable Variants Empiric (RAVE) study conducted at Mayo Clinic. Participants (n = 2535, mean age 63 ± 7, 57% female) were sequenced for 68 clinically actionable genes and 14 single nucleotide variants. Of 122 actionable results detected, 118 were returnable; results were returned by a genetic counselor-86 in-person and 12 by phone. Challenges in returning actionable results were encountered in a significant proportion (38%) of the cohort and were related to sequencing and participant contact. Sequencing related challenges (n = 14), affecting 13 participants, included reports revised based on clinical presentation (n = 3); reports requiring corrections (n = 2); mosaicism requiring alternative DNA samples for confirmation (n = 3); and variant re-interpretation due to updated informatics pipelines (n = 6). Participant contact related challenges (n = 44), affecting 38 participants, included nonresponders (n = 20), decedents (n = 1), and previously known results (n = 23). These results should be helpful to investigators preparing for return of results in large-scale genomic sequencing projects.Year: 2020 PMID: 33574325 DOI: 10.1038/s41525-020-0127-2
Source DB: PubMed Journal: NPJ Genom Med ISSN: 2056-7944 Impact factor: 8.617