Literature DB >> 33572266

De Novo Venom-Gland Transcriptomics of Spine-Bellied Sea Snake (Hydrophis curtus) from Penang, Malaysia-Next-Generation Sequencing, Functional Annotation and Toxinological Correlation.

Choo Hock Tan1, Kae Yi Tan2.   

Abstract

Envenomation resulted from sea snake bite is a highly lethal health hazard in Southeast Asia. Although commonly caused by sea snakes of Hydrophiinae, each species is evolutionarily distinct and thus, unveiling the toxin gene diversity within individual species is important. Applying next-generation sequencing, this study investigated the venom-gland transcriptome of Hydrophis curtus (spine-bellied sea snake) from Penang, West Malaysia. The transcriptome was de novo assembled, followed by gene annotation and sequence analyses. Transcripts with toxin annotation were only 96 in number but highly expressed, constituting 48.18% of total FPKM in the overall transcriptome. Of the 21 toxin families, three-finger toxins (3FTX) were the most abundantly expressed and functionally diverse, followed by phospholipases A2. Lh_FTX001 (short neurotoxin) and Lh_FTX013 (long neurotoxin) were the most dominant 3FTXs expressed, consistent with the pathophysiology of envenomation. Lh_FTX001 and Lh_FTX013 were variable in amino acid compositions and predicted epitopes, while Lh_FTX001 showed high sequence similarity with the short neurotoxin from Hydrophis schistosus, supporting cross-neutralization effect of Sea Snake Antivenom. Other toxins of low gene expression, for example, snake venom metalloproteinases and L-amino acid oxidases not commonly studied in sea snake venom were also identified, enriching the knowledgebase of sea snake toxins for future study.

Entities:  

Keywords:  Hydrophis hardwickii; Lapemis hardwickii; alpha-neurotoxin; envenomation; snakebite; three-finger toxin

Mesh:

Substances:

Year:  2021        PMID: 33572266      PMCID: PMC7915529          DOI: 10.3390/toxins13020127

Source DB:  PubMed          Journal:  Toxins (Basel)        ISSN: 2072-6651            Impact factor:   4.546


  58 in total

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  5 in total

Review 1.  Marine Origin Ligands of Nicotinic Receptors: Low Molecular Compounds, Peptides and Proteins for Fundamental Research and Practical Applications.

Authors:  Igor Kasheverov; Denis Kudryavtsev; Irina Shelukhina; Georgy Nikolaev; Yuri Utkin; Victor Tsetlin
Journal:  Biomolecules       Date:  2022-01-23

2.  Elucidating the Venom Diversity in Sri Lankan Spectacled Cobra (Naja naja) through De Novo Venom Gland Transcriptomics, Venom Proteomics and Toxicity Neutralization.

Authors:  Kin Ying Wong; Kae Yi Tan; Nget Hong Tan; Christeine Ariaranee Gnanathasan; Choo Hock Tan
Journal:  Toxins (Basel)       Date:  2021-08-10       Impact factor: 4.546

3.  De novo venom gland transcriptomics of Calliophis bivirgata flaviceps: uncovering the complexity of toxins from the Malayan blue coral snake.

Authors:  Praneetha Palasuberniam; Kae Yi Tan; Choo Hock Tan
Journal:  J Venom Anim Toxins Incl Trop Dis       Date:  2021-09-24

4.  Venom of the Annulated Sea Snake Hydrophis cyanocinctus: A Biochemically Simple but Genetically Complex Weapon.

Authors:  Hong-Yan Zhao; Yan Sun; Yu Du; Jia-Qi Li; Jin-Geng Lv; Yan-Fu Qu; Long-Hui Lin; Chi-Xian Lin; Xiang Ji; Jian-Fang Gao
Journal:  Toxins (Basel)       Date:  2021-08-06       Impact factor: 4.546

Review 5.  Snake Venomics: Fundamentals, Recent Updates, and a Look to the Next Decade.

Authors:  Choo Hock Tan
Journal:  Toxins (Basel)       Date:  2022-03-30       Impact factor: 5.075

  5 in total

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